Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2256 86.0 6e-12 seq16648 82.4 8e-11 >seq2256 Length=33050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || || |||| ||||||||||| |||||||| ||||| Sbjct 3576 GCCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 3635 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||||| ||||| || || ||| | |||||||| |||||||| ||||| Sbjct 3636 CAGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3695 Query 139657 TATGCCTTCTTTGTC 139671 || || || ||||| Sbjct 3696 AATACCCTCCTTGTC 3710 >seq16648 Length=236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || || || | || |||||||| |||||||| ||||| Sbjct 201 GCCACCTCTAAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGA 142 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || |||||| ||||| || || ||| | || |||||||||||||| ||||| Sbjct 141 CAGCGTCCTGCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGG 82 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | || | ||||| | || | || || | ||||| | Sbjct 81 AATTCCCTCCTTATC-CTGAATCTTGGCTTTTACGTTCTCGATGGTATCTGATGGCTCAA 23 Query 139716 CCTCAACGGTCACCGTCTTGCC 139737 | || | ||| | |||||||| Sbjct 22 CATCTAAGGTGATGGTCTTGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495931625321600