Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2111 84.2 2e-11 seq2256 82.4 8e-11 >seq2111 Length=7548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 157061 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 157120 || |||||||||||||| || | || || || |||||||| ||||| ||| Sbjct 4826 GATGCTAGATTACATACAGCTATCTCTTCAGGACTTGTATATTGTATAATTTCGCAACAT 4767 Query 157121 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 157180 |||||||| | ||| | || || |||||||||| || | |||||||| ||| Sbjct 4766 AAATTGCTCGAACGTATACACCCAAGATGTTTTTGATTGCTCTTTCTATTGCAAGCATCC 4707 Query 157181 TTGTATAACATGTACGGTGTGCCGGTTTC 157209 ||||||||||| |||||||| || ||||| Sbjct 4706 TTGTATAACATATACGGTGTTCCTGTTTC 4678 >seq2256 Length=33050 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | || ||||||| ||||| ||||| || ||||||||||| Sbjct 3576 GCCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 3635 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| || || || || ||| | |||||||| |||||||| ||||| Sbjct 3636 CAGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3695 Query 143077 TATGCCTTCTTTGTC 143091 || || || ||||| Sbjct 3696 AATACCCTCCTTGTC 3710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506879103207360