Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3399 100 3e-16 seq2256 89.7 5e-13 seq16648 82.4 7e-11 >seq3399 Length=84741 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 ||||| ||||||||||| ||| | || | || | || || |||||||| || ||| | Sbjct 39833 TCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCA-TCATCAAGCTGCTTTCCAGCGAA 39891 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||||| ||||||||||| ||||| || || |||||||| ||| || ||| | | Sbjct 39892 GATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATT 39951 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| |||| | ||| | ||||| ||| | ||||| || || || || || || Sbjct 39952 TTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGTCAGTGTCTTCAC 40011 Query 131223 GAAAATCTGCAT 131234 ||||||||||| Sbjct 40012 AAAAATCTGCAT 40023 >seq2256 Length=33050 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || | || ||| ||||| ||||| | ||| || || || |||||||||||||| Sbjct 3344 AGCCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAG 3403 Query 131066 TCATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGA 131124 || || | || | || || | ||||||||| || | || | ||||||||| || ||| Sbjct 3404 ACAGCGTCCTGCCA-TCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGA 3462 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 || || || || ||||| || ||| ||| | | ||| | ||||| | | ||| Sbjct 3463 GGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCA 3522 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA---ATCTGCATG 131235 | || | ||| | || || || || ||||| || ||||| ||||||||| Sbjct 3523 ACATCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| ||||| ||||| | ||| ||||| || |||||||||||||| Sbjct 3576 GCCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 3635 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || || | || | || || ||||||||||| || | || | ||||||||| || |||| Sbjct 3636 CAGCGTCCTGCCA-TCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAG 3694 Query 131126 GGATTCCTTCTTTGTC 131141 | || || || ||||| Sbjct 3695 GAATACCCTCCTTGTC 3710 >seq16648 Length=236 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| ||||| ||||| | ||| ||||| || |||||||||||||| Sbjct 201 GCCACCTCTAAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGA 142 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | ||| || ||||||||||| || | || | ||| ||||| || ||||| Sbjct 141 CAGCGTCCTGCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGG 82 Query 131127 GATTCCTTCTTTGTC 131141 ||||| || || || Sbjct 81 AATTCCCTCCTTATC 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471886843384320