Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5701 127 1e-24 seq1178 116 2e-21 seq2256 105 4e-18 seq19648 100 2e-16 seq3399 98.7 7e-16 seq2704 96.9 2e-15 >seq5701 Length=2501 Score = 127 bits (140), Expect = 1e-24 Identities = 87/98 (89%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 25899 AATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCT 25953 || ||||||||||||||||||||| |||||||||||||||||||||| || ||||| Sbjct 1540 AACAAGCCCGTTCCCTTGGCTGTGATTTCGCTAGATAGTAGATAGGGAGAGTGGGAATCT 1599 Query 25954 CGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||| ||||||| |||||||||||||||| ||| Sbjct 1600 CGTTAATCCATTCATGCACGTCACTAATTAGATGGCGA 1637 >seq1178 Length=43898 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || | |||||| Sbjct 4256 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGAAGTCTCGT 4315 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 ||||| || |||| || |||||||||||||||| Sbjct 4316 TAATCAATTAATGCACGCCACTAATTAGATGACG 4349 >seq2256 Length=33050 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| ||| | |||||||||||| || || || ||||| |||||||||||| Sbjct 3346 CCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGAC 3405 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || || || || |||||||| || || || || ||||| | || Sbjct 3406 AGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3465 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| || ||||||||||| | |||||| ||||| Sbjct 3466 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACA 3525 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT---ATCTGCATG 38318 ||||| || || || || || |||| || |||||||| ||||||||| Sbjct 3526 TCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | |||||||||||| || ||| || ||||| |||||||||||| Sbjct 3577 CCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 3636 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || |||||||| || || || || ||||| | || Sbjct 3637 AGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3696 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| ||| ||||||||||| | |||||| ||||| Sbjct 3697 ATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTATCTGATGGCTCAACA 3756 Query 38271 TCTAATGTAAT 38281 ||||| || || Sbjct 3757 TCTAAGGTGAT 3767 >seq19648 Length=2982 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||| ||||||||||||| ||||||||||||||| || |||||||| Sbjct 166 AAGCCCATTCCCTTAGCTGTGGTTTCGCAAGATAGTAGATAGGGACAGTGGGAATCTCGT 225 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| || |||||| |||| ||| Sbjct 226 TAATCCATTCATGCAGATCGCTAATTCGATGGCGA 260 >seq3399 Length=84741 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||||| ||||| ||||| ||||| || || | | | | || || Sbjct 39815 ACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39874 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||| || || |||||||| || || || | || | || ||||||||| Sbjct 39875 AGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGG 39934 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||| | || ||| || | || || || | || |||||||| Sbjct 39935 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTC 39994 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||||| || ||||| || |||||||| || Sbjct 39995 CCCGTCAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2704 Length=6194 Score = 96.9 bits (106), Expect = 2e-15 Identities = 76/91 (84%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||| ||| |||||||| || |||| ||| Sbjct 3473 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGGTAGCAGATAGGGGCAGTGGGAATCGCGT 3532 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 | |||| ||||||| ||||| || |||||| Sbjct 3533 TTATCCATTCATGCACGTCATTAGCTAGATG 3563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334860053856188