Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2256 118 9e-22 seq3399 95.1 1e-14 seq16648 82.4 7e-11 >seq2256 Length=33050 Score = 118 bits (130), Expect = 9e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || |||||| |||| || || | ||||| | || || ||| | || || || || Sbjct 3563 TTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCCATCAGATACCATT 3504 Query 25068 GAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126 ||| ||||| | || | ||| ||||| || || ||||| ||||| || ||||| | Sbjct 3503 GAGAATGTGAAGGCGAAGATTCAG-GACAAGGAGGGTATTCCTCCTGATCAGCAGCGTCT 3445 Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 |||||||||||||| || || ||||||| | || || |||||||| ||||| || Sbjct 3444 GATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTACAACATTCAGAA 3385 Query 25187 AGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || ||||| |||||| | || ||||| || Sbjct 3384 AGAATCAACCCTTCATTTGGTGCTACGTCTGAGAGGCGG 3346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 25035 ATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGA 25093 ||||| | || || ||| | || || || || ||| ||||| |||| | ||| || Sbjct 3767 ATCACCTTAGATGTTGAGCCATCAGATACCATTGAGAATGTGAAGGCAAAGATTCAG-GA 3709 Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||| || || ||||| ||||| || ||||| | |||||||||||||| || | ||||| Sbjct 3708 CAAGGAGGGTATTCCTCCTGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAAGA 3649 Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 || | || || |||||||| ||||| ||||| || || || ||||| ||||| | Sbjct 3648 TGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCATTTGGTGCTCCG 3589 Query 25214 GCTAAGAGGAGG 25225 || ||||| || Sbjct 3588 TCTTAGAGGTGG 3577 >seq3399 Length=84741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| |||| || ||| | || || |||| |||||| | || Sbjct 40024 AATGCAGATTTTTGTGAAGACACTGACGGGGAAAACTATAACCCTCGACGTGGAGCCTTC 39965 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 39964 CGACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCAGACCA 39905 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | || |||| | ||| | ||| ||||| Sbjct 39904 GCAGCGCCTAATCTTCGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAA 39845 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||| ||| || || || || Sbjct 39844 CATTCAGAAGGAAAGCACTCTTCACTTGGT 39815 >seq16648 Length=236 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACT 25091 ||||||| | || || ||| | || || || |||||| | || || || | ||| Sbjct 8 CCATCACCTTAGATGTTGAGCCATCAGATACCATCGAGAACGTAAAAGCCAAGATTCAG- 66 Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || || || ||||| ||||| || || || | |||||||||||||| || | ||| Sbjct 67 GATAAGGAGGGAATTCCTCCTGATCAGCAACGTCTCATTTTTGCCGGCAAGCAGCTGGAA 126 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | || || |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 127 GACGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCAACCCTCCATTTGGTGCTC 186 Query 25212 AGGCTAAGAGGAGG 25225 | || ||||| || Sbjct 187 CGTCTTAGAGGTGG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433215257262620