Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2256 122 7e-23 seq16648 100 2e-16 seq3399 87.8 2e-12 >seq2256 Length=33050 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || ||| | || || || ||| |||| | || || || | | |||||| | Sbjct 3563 TTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCCATCAGATACCATT 3504 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 || || | || || ||||| ||||||||||||||||| || ||||| || ||||| Sbjct 3503 GAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGCGTCTG 3444 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || ||||||||||| ||||| || ||| | | || | || |||||||||||||| ||| Sbjct 3443 ATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTACAACATTCAGAAA 3384 Query 22408 GAATCCACCATACATTTAGT 22427 ||||| ||| | ||||| || Sbjct 3383 GAATCAACCCTTCATTTGGT 3364 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| ||||| ||||||||||||||||| || ||||| Sbjct 3743 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAG 3684 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| | | || | || ||||||||| Sbjct 3683 CAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAAGATGGCAGGACGCTGTCTGATTACAAC 3624 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || ||| | ||||| || Sbjct 3623 ATTCAGAAAGAGTCTACCCTTCATTTGGT 3595 >seq16648 Length=236 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||| ||||| || ||||| |||||||| || ||||||||||| Sbjct 58 AAGATTCAGGATAAGGAGGGAATTCCTCCTGATCAGCAACGTCTCATTTTTGCCGGCAAG 117 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || | | || | || |||||||||||||| ||||| || ||| | ||| Sbjct 118 CAGCTGGAAGACGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCAACCCTCCAT 177 Query 22423 TTAGT 22427 || || Sbjct 178 TTGGT 182 >seq3399 Length=84741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 |||| || ||||| |||||||| || || | || || ||||| | || || || ||| Sbjct 40032 TTTGCGAAAATGCAGATTTTTGTGAAGACACTGACGGGGAAAACTATAACCCTCGACGTG 39973 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || | |||| || | || || | || || || || ||||| ||||||||||| Sbjct 39972 GAGCCTTCCGACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGTATTCCT 39913 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || || || || || || || || || || || ||| | || ||| | | || ||||| Sbjct 39912 CCAGACCAGCAGCGCCTAATCTTCGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCC 39853 Query 22390 GATTACAACATTCAAAAAGAA 22410 || ||||||||||| || ||| Sbjct 39852 GACTACAACATTCAGAAGGAA 39832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419618795693620