Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3399 107 2e-18 seq2256 86.0 5e-12 >seq3399 Length=84741 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 ||| || ||||||||||| ||| | ||| | ||| ||||| || || |||||| | Sbjct 39832 TTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCGAA 39891 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 ||| || ||||| ||||| |||||||| || |||||||| ||||| || | | Sbjct 39892 GATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATT 39951 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 ||| | ||||||| | || ||||| | ||| | ||||| || ||||| || || || Sbjct 39952 TTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGTCAGTGTCTTCAC 40011 Query 114371 AAAAATCTGCAT 114382 |||||||||||| Sbjct 40012 AAAAATCTGCAT 40023 >seq2256 Length=33050 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || |||||||| |||||||||||||| || || | |||||| Sbjct 3364 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTCC 3423 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | || || || || | || |||||||| || || |||||||| || || ||||| | Sbjct 3424 AACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTGA 3483 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| ||| || | | || || || | ||| | ||| ||| Sbjct 3484 ATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTCTTG 3543 Query 114354 CCGGTCAGAGTTTTTAC---AAAAATCTGCATG 114383 || |||||||| || || || ||||||||| Sbjct 3544 CCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420025089956976