Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq3360 89.7 5e-13 seq649 86.0 6e-12 seq9070 84.2 2e-11 seq4524 84.2 2e-11 seq3703 84.2 2e-11 seq727 84.2 2e-11 >seq3360 Length=4818 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 136971 AGGCA-ACCAATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATG 137029 ||||| |||||||| | | ||||||||||| |||||| ||||||||| ||||||||| Sbjct 1939 AGGCAGACCAATGGTCCCAACCGGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATG 1998 Query 137030 CTCTGACCAACTGAGCTAAACGTCCT 137055 |||| ||||||||||||| | | ||| Sbjct 1999 CTCTAACCAACTGAGCTATAGGACCT 2024 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 136976 ACCAATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGA 137035 |||||||| | | ||||||||||| |||||| ||||||||| ||||||||||||| | Sbjct 1725 ACCAATGGTCCCAACCGGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAA 1784 Query 137036 CCAACTGAGCTAAACGTCCT 137055 |||||||||||| | | ||| Sbjct 1785 CCAACTGAGCTATAGGACCT 1804 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136976 ACCAATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGA 137035 |||||||| | | ||||||||||| |||||| ||||||||| ||||||||||||| | Sbjct 2459 ACCAATGGTCCCAACCGGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAA 2518 Query 137036 CCAACTGAGCTA 137047 |||||||||||| Sbjct 2519 CCAACTGAGCTA 2530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 1441 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 1500 Query 137052 TCCT 137055 ||| Sbjct 1501 ACCT 1504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 2695 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 2754 Query 137052 TCCT 137055 ||| Sbjct 2755 ACCT 2758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 3224 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 3165 Query 137052 TCCT 137055 ||| Sbjct 3164 ACCT 3161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTA 137047 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 3290 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTA 3235 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 136976 ACCAATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGA 137035 |||||||| | | || |||||||| |||||| ||||||||| ||||||||||||| | Sbjct 2192 ACCAATGGTCCCAACCGGGCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAA 2251 Query 137036 CCAACTGAGCTAAACGTCCT 137055 |||||||||||| | | ||| Sbjct 2252 CCAACTGAGCTATAGGACCT 2271 >seq649 Length=705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136976 ACCAATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGA 137035 |||||||| | | ||||||||||| |||||| ||||||||| ||||||||||||| | Sbjct 288 ACCAATGGTCCCAACCGGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAA 347 Query 137036 CCAACTGAGCTA 137047 |||||||||||| Sbjct 348 CCAACTGAGCTA 359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 4 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 63 Query 137052 TCCT 137055 ||| Sbjct 64 ACCT 67 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 397 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 456 Query 137052 TCCT 137055 ||| Sbjct 457 ACCT 460 >seq9070 Length=11610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTAAACG 137051 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| | | Sbjct 869 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTATAGG 928 Query 137052 TCCT 137055 ||| Sbjct 929 ACCT 932 >seq4524 Length=19767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTA 137047 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 4259 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTA 4204 >seq3703 Length=23370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTA 137047 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 20867 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTA 20812 >seq727 Length=10595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136992 GGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAACTGAGCTA 137047 ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 7090 GGTCTCGAACCGGCGACCTTTCGGTTATTAGCCGAATGCTCTAACCAACTGAGCTA 7035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454381116034560