Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2256 114 1e-20 seq16648 104 2e-17 seq3399 86.0 6e-12 >seq2256 Length=33050 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||||| || |||||||| |||||||||||||| | | || | | ||| Sbjct 3361 AGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCT 3420 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||||||| |||| || |||||||| || |||||||| || || || || Sbjct 3421 TCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCC 3480 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || |||| || | ||| Sbjct 3481 TGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTC 3540 Query 64412 TTGCCGGTCAAAGTTTTTACGAA 64434 ||||| |||| ||| || ||||| Sbjct 3541 TTGCCAGTCAGAGTCTTCACGAA 3563 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||||| || || ||||| |||||||||||||| | | || | | ||| Sbjct 3592 AGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCT 3651 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| |||| || |||||||| || |||||||| || || || || Sbjct 3652 TCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCC 3711 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC 64383 || || ||| ||| ||| ||| | ||||| Sbjct 3712 TGAATCTTTGCCTTCACATTCTCAATGGTATC 3743 >seq16648 Length=236 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || ||||| |||||||||||||| | | || | ||||| Sbjct 185 AGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCGTCT 126 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| ||||||| || ||||| || ||||||||||| || || || Sbjct 125 TCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGGAATTCCCTCCTTATCC 66 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| ||| | ||||| | || || |||| || | |||| Sbjct 65 TGAATCTTGGCTTTTACGTTCTCGATGGTATCTGATGGCTCAACATCTAAGGTGATGGTC 6 Query 64412 TTGCC 64416 ||||| Sbjct 5 TTGCC 1 >seq3399 Length=84741 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| || ||||||||||| || | || || | | || ||||||||||| || || | Sbjct 39832 TTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCGAA 39891 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 || || ||||||||||| |||||||| || ||||| || || || || ||| ||| Sbjct 39892 GATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATT 39951 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || | ||||| || | |||| || || || |||| || || || Sbjct 39952 TTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGTCAGTGTCTTCAC 40011 Query 64432 GAAAATTTGCATTTT 64446 ||||| |||||||| Sbjct 40012 AAAAATCTGCATTTT 40026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499511469785120