Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3399 105 7e-18 seq2256 84.2 2e-11 >seq3399 Length=84741 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||| ||||||||||||||| | ||| | || | || || || || || || | | Sbjct 39833 TCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCA-TCATCAAGCTGCTTTCCAGCGAA 39891 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 |||||| ||||| ||||| ||||| ||||| |||||||| ||| || || | | Sbjct 39892 GATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATT 39951 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | ||||||| | |||||| |||| || | ||||| || ||||| || || || Sbjct 39952 TTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGTCAGTGTCTTCAC 40011 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 40012 AAAAATCTGCAT 40023 >seq2256 Length=33050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/237 (69%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||||||||||| || ||| | || ||||| | | |||| || || ||||||||||| || Sbjct 3342 GCAGCCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATC 3401 Query 138444 GCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 || || | || | || || | || || |||| | | || |||||||| || || | Sbjct 3402 AGACAGCGTCCTGCCA-TCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAG 3460 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGAC 138561 |||| ||||| || ||||| ||| | || | || | | || | ||| || | | | Sbjct 3461 GAGGAATACCCTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGC 3519 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC---AAAAATCTGCATG 138615 || || || | || | ||| || ||||||||||| || || || ||||||||| Sbjct 3520 TCAACATCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496129972378560