Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3399 105 6e-18 seq2256 96.9 3e-15 >seq3399 Length=84741 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| ||||||||| |||| | |||||||| || ||||| || ||||| || Sbjct 39868 ATCATCAAGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTT 39927 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||| | | ||||| ||||| | | ||| || |||| ||| | Sbjct 39928 GTCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTAT 39987 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| || || |||||||||||||| Sbjct 39988 AGTTTTCCCCGTCAGTGTCTTCACAAAAATCTGCAT 40023 >seq2256 Length=33050 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || || ||||| ||||| |||||||| || ||| | ||| || Sbjct 3363 CACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTC 3422 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || || || | |||| ||||||||||| ||||| || |||||||||||| Sbjct 3423 CAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTG 3482 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | | || | ||| || | ||| || || | ||| | ||| || Sbjct 3483 AATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTCTT 3542 Query 127084 GCCGGTCAGAGTTTTTAC---AAAAATCTGCATG 127114 ||| |||||||| || || || ||||||||| Sbjct 3543 GCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | ||||||||||| ||||| |||||||| || ||| | ||| || Sbjct 3594 CACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTC 3653 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 ||||| || || || | |||| ||||||||||| ||||| || |||||||||||| Sbjct 3654 CAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCC 3711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475373912611520