Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2256 129 1e-24 seq16648 123 6e-23 seq3399 122 2e-22 >seq2256 Length=33050 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || || | |||||| |||| || ||||| |||||||||| |||| Sbjct 3370 TGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTCCAACTGC 3429 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || || ||||||||||| || ||| ||| || || ||||||||||| Sbjct 3430 TTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTC 3489 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| || | ||| |||| || || ||||| || ||||||||||| || || Sbjct 3490 GCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTCTTGCCAGTC 3549 Query 199607 AGAGTTTTCACAAA 199620 ||||| ||||| || Sbjct 3550 AGAGTCTTCACGAA 3563 Score = 116 bits (128), Expect = 9e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||| || || | |||||| |||| || ||||| ||||||||||||||| Sbjct 3601 TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTCCAGCTGC 3660 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || || ||||||||||| || ||| ||| || || |||||||||||| Sbjct 3661 TTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTT 3720 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||| || | ||| |||| || || ||||| || ||||| Sbjct 3721 GCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGAT 3767 >seq16648 Length=236 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || ||||| || || | |||||| |||| || ||||| || |||||||||||| Sbjct 176 TGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCGTCTTCCAGCTGC 117 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || |||||||| ||||| || ||| |||||| || ||||||||||| Sbjct 116 TTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGAATCTTG 57 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 || ||| |||| ||| |||| || || ||||| || ||||| ||||| || Sbjct 56 GCTTTTACGTTCTCGATGGTATCTGATGGCTCAACATCTAAGGTGATGGTCTTGCC 1 >seq3399 Length=84741 Score = 122 bits (134), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| || | ||||||||| | | ||| || ||||| || ||||| Sbjct 39820 GTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTG 39879 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| |||||||| || ||||||||||| ||| ||| || ||| ||||| ||||| Sbjct 39880 CTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTT 39939 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||||| ||||| | | || || || | || || || || ||||| Sbjct 39940 GGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGT 39999 Query 199606 GAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 || || ||||||||||| || |||||| || Sbjct 40000 CAGTGTCTTCACAAAAATCTG---CATTTTCGC 40029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178599139890316