Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2200 228 3e-54 seq2174 217 6e-51 seq2256 118 4e-21 seq16648 95.1 5e-14 >seq2200 Length=7229 Score = 228 bits (252), Expect = 3e-54 Identities = 879/1347 (65%), Gaps = 68/1347 (5%) Strand=Plus/Minus Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||||| ||||| |||| | ||| ||||| ||| | | || || || || | |||||| Sbjct 2632 AAGTACATTATCAAGGCGCAACCAAAACGTTTCATGCAGAGGAGATATCTGCAATGGTTT 2573 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | | || ||||| |||| ||| || | | | || || | || ||||| | Sbjct 2572 TAATGAAGATGAAGGAAATAGCGGAGGCGTTTTTGGGGAAGGACGTGAAGGAAGCAGTTA 2513 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 |||| |||||||| |||||||| ||| | ||| | || || || || ||||| ||| | Sbjct 2512 TTACGGTTCCCGCATATTTCAACGATTCGCAAAGACAGGCGACAAAGGATGCGGGAACAA 2453 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 | || || || ||||| | ||||| ||||| |||||||||||||| || |||| |||| Sbjct 2452 TAGCAGGATTGAATGTATTACGAATAATTAACGAACCTACAGCAGCAGCAATAGCGTATG 2393 Query 451449 GACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 | |||| || | ||| || | ||| | ||| | || |||||||| | || ||| Sbjct 2392 GTCTAG----ATAAGAAGGGGCAGGGAGAGATGAATGTGTTGATATTTGATATGGGAGGA 2337 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || ||| ||| | || ||||||||||||| ||||||| || |||||||| Sbjct 2336 GGCACGTTCGATGTGTCTCTCCTCACAATTGAAGATGGTATATTTGAGGTGAAGGCAACA 2277 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGAAA 451627 || || || ||| |||| || |||||| |||||||| | || | || ||| | Sbjct 2276 GCAGGAGACACACATTTAGGGGGGGAAGATTTTGATAATCGTTTAGTAG-ATTTTTGTAT 2218 Query 451628 AC-TGATGTTCA--ACGAAAACTA--AAAGTAGATATTTCTACTAACCAAAAAGCACTTA 451682 || ||| |||| | ||| | || || ||| || || ||| | || | | Sbjct 2217 ACAAGAT-TTCAAGAGGAAGAATAGGAATAAAGACATAAGCACAAACAGTAGGGCCTTGA 2159 Query 451683 GACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCA---ACACAAACTA 451739 || | | ||| | |||| ||| || ||||| ||| |||||| ||| Sbjct 2158 GAAGATTACGGACACAATGTGAAAGAGCGAAGCGAACACTATCATCAAGCACACAAGCTA 2099 Query 451740 CTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTG 451799 | || | |||||| || |||| || || |||||| || | || | | | Sbjct 2098 C---AATTGAAATTGATTCGCTATTTGAAGGGATTGATTATTCTGTCTCCCTATCAAGAG 2042 Query 451800 CTAAATTTGAATCAATTTGT---TCCAGTATTTTTGCA--CGGGTAATGAAACCTGTTGA 451854 ||| |||||| | |||| | | |||||| | | | |||| || ||||| Sbjct 2041 CTAGATTTGA--GGAGTTGTGCATTGATTATTTTAGAAATTCGTTAAT---TCCAGTTGA 1987 Query 451855 TCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGG 451914 | || || | ||| | | || ||| || | ||||| | ||| | ||||| Sbjct 1986 AAAGGTTTTGAAGGATGCAAGCATAGATAAGCGTAGTGTACATGAAGTGGTGTTGGTAGG 1927 Query 451915 AGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGGA--GGAAAA 451972 || || || || || |||||||| ||| | || | || ||||| | || || Sbjct 1926 GGGATCGACGCGTATACCTAAAATCCAACA-AT-TAATCCAGGAATTTTTCAATGGGAAG 1869 Query 451973 CAACTATGTAAGAGC-GTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGC 452031 | | ||| ||| | |||| |||||||| || ||||||||||||||||| || ||||| Sbjct 1868 GAGCCGTGT-AGATCTATAAACCCTGATGAGGCCGTTGCATATGGTGCTGCTGTCCAAGC 1810 Query 452032 AGCTATTCTAACAGGTTCAGATGATGAA----AAATTAGGAGATATTCTGTTAGTAGATG 452087 |||||| ||| ||| || ||| || || | |||| | | ||| |||||| Sbjct 1809 AGCTATATTAAAAGG---AG-TGAATAACTCGCAAGTGCAAGATTTATTATTATTAGATG 1754 Query 452088 TAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAAC 452147 | | || |||| | || | |||||||| ||||| | ||||| || ||||| | Sbjct 1753 TGGCGCCATTATCGTTAGGGTTAGAAACAGCAGGTGGTGTTATGACGAAATTAAT--AGA 1696 Query 452148 GAGGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA---GCAAGTGATAA 452202 ||||| || | || || || ||| || | ||||| ||| ||| ||||| Sbjct 1695 GAGGAATACAACCATCCCAACAAAGAAGTCGCAGATATTTACAACATATGCA---GATAA 1639 Query 452203 CCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAA 452262 ||||||||||| || ||||||||||||||||| | |||||||| ||||||||| Sbjct 1638 TCAACCAGGTGTGTTAATACAAGTGTTTGAAGGAGAGAGAGCAATGACGAAAGATAATAA 1579 Query 452263 TAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAAT 452322 ||| || | ||| ||| ||| |||||| ||| | || ||| ||||| Sbjct 1578 CTTACTGGGGAAGTTTCATCTGGACGGCATCCCTCCTGCCCCACGTGGCGTTCCCCAAAT 1519 Query 452323 TGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAAT 452381 ||| | | | ||| ||||||| ||||| ||| | || || | ||| || || | Sbjct 1518 AGAAGTAGCATTCGATATTGATGCTAATGGCATTATGAACGTAACAGCAACAGAGAAGAA 1459 Query 452382 CATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAA----AAACCGTTTATCTAAA 452437 || | ||||| || | |||| || ||||| |||||||| | || ||| | || Sbjct 1458 CA-CAGGAAAGTCGAATCAAATAACGATTACGAATGATAAGGGGAGAC---TTA-CACAA 1404 Query 452438 GAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA--CAAG 452495 |||| || || | |||| ||| |||||||| || | || | ||| |||||| ||| Sbjct 1403 CAAGAGATAGATAGAATGATAGGAGAAGCAGAGAAGTATAAAGCTGAAGATGAAGCCAA- 1345 Query 452496 TTAGAAAACA-TGTTGAAGCTAAAAAC 452521 || |||||| |||||||| || ||| Sbjct 1344 -TA-AAAACAGAGTTGAAGCGAAGAAC 1320 >seq2174 Length=7393 Score = 217 bits (240), Expect = 6e-51 Identities = 451/668 (68%), Gaps = 15/668 (2%) Strand=Plus/Plus Query 450911 GTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGA 450970 |||| || || |||||| | || || |||| |||||||| || || || | | || Sbjct 1538 GTAGTGATAGGTATTGATTTAGGTACTACCTACTCATGTGTTGGGGTGTATAGACAGGGT 1597 Query 450971 AATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTT 451030 |||||| || ||| ||||||| || || || | |||||| | ||| |||| Sbjct 1598 CGTGTAGATATCATACCAAATGATCAGGGTAATCGTATTACTCCAAGTTATGTATCTTTT 1657 Query 451031 ACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATG--GTAAATTCAAATGCC 451087 | ||| |||||| |||| ||||||| || | ||| | |||| ||| | Sbjct 1658 GCTGATGATGAAAGAAAGATAGGAGAAGCTGCAAAGAATGATGCAGCAAAT---AATCCT 1714 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTA 451147 | ||| || | | ||||| |||||||| ||||| ||| | | |||| | ||| Sbjct 1715 ACAAATACTATCTTTGATGTCAAACGTTTGATTGGTCGTCGCTTTAATGAGAAAGAAGTA 1774 Query 451148 CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || | ||| ||| | | || | ||| | | ||| || | |||||||| || ||| Sbjct 1775 CAGAGAGATAAAGAGCTGCTTCCGTATTCAATTATTAATAAAGACGGAAAGCCATACATT 1834 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 | || | ||||| | | ||| || || || |||||| |||| |||||||| Sbjct 1835 CGTGTGACAGTCAAAGGACAGCCAAAAGAGTTAGCACCAGAAGAAGTTTCTGCTATGGTT 1894 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | ||||||||||||| || ||| | ||| ||||| ||||| |||| || Sbjct 1895 TTAGGTAAAATGAAAGAAGTTGCTGAAAATTATCTTGGTAAAGAAGTTAAGAATGCTGTT 1954 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 ||||||| || || |||||||||||||| || | ||||| || || ||||| ||| | Sbjct 1955 GTTACTGTACCTGCATATTTCAATGATGCTCAGAGACAAGCTACAAAGGATGCTGGAGCT 2014 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| || ||||||||| |||| ||||||||||||||||| ||||| ||| | || ||| Sbjct 2015 ATTGCAGGATTAAATGTTATTCGTATTATTAATGAACCTACTGCAGCAGCTATTGCTTAT 2074 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 ||||| | | ||||| || ||||||| |||| | |||| ||| ||||||| Sbjct 2075 GGACT-------TGATAAGAA--GGATGAAAAAACTATTCTTGTATACGATCTTGGTGGT 2125 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || |||| |||||| ||| || || | || || || ||||| | || || Sbjct 2126 GGTACCTTTGATGTTTCTGTTCTTGTTATCGACAACGGTGTGTTCGAAGTCCACGCTACT 2185 Query 451568 AATGGTGA 451575 |||||| Sbjct 2186 TCTGGTGA 2193 Score = 105 bits (116), Expect = 3e-17 Identities = 231/347 (67%), Gaps = 17/347 (5%) Strand=Plus/Plus Query 451842 TGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAA 451901 ||||||| || | ||||||||| | ||| | | ||| ||| | || ||||| | Sbjct 2825 TGAAACCCGTGAAACAAGTATTAGAAGATGCAGATCTTAAGAAATCACAGATCGATGAGA 2884 Query 451902 TTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCT 451957 |||| | || || |||||||| || |||||||| |||||| | | | | |||| Sbjct 2885 TTGTTTTGGTTGGTGGTTCTACTCGTATTCCTAAGATTCAACAACTTATTAAAGAATTCT 2944 Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017 | | |||||| ||| | || | |||||||||||||||||||| || ||| Sbjct 2945 T----TAACGGAAAAGAACCCAACAGAGGCATTAATCCTGATGAAGCTGTTGCTTACGGT 3000 Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTG 452077 || || ||||| |||| ||| ||| |||| ||| | | |||||| || Sbjct 3001 GCAGCTGTTCAGGCAGGTATCCTATCAGG---------CGAAGGAACACAAGATATGGTG 3051 Query 452078 TTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAAT 452137 || | ||||| |||||||| | ||||| ||||||| ||||| || | ||| | || Sbjct 3052 TTGCTTGATGTTACACCTCTTACCCTTGGTATTGAAACTGCTGGAGGTGTTATGGCCAAG 3111 Query 452138 TTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATT 452184 | ||||| | ||| ||| ||| ||||||| |||||||| Sbjct 3112 GTTATTAATAAAAATACTGTTATACCTACAAAAAAGACACAAACATT 3158 >seq2256 Length=33050 Score = 118 bits (130), Expect = 4e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118 ||||| || || |||||||| || || || || | |||||||| |||| |||| |||| Sbjct 3563 TTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCCATCAGATACCATT 3504 Query 391119 GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTA 391178 || | | || || ||||| || ||||| || |||||||||||||| || ||| | Sbjct 3503 GAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGCGTCTG 3444 Query 391179 ATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAG 391238 ||||| | || || || | |||||||| || || || | ||||| || ||| | || Sbjct 3443 ATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTACAACATTCAGAAA 3384 Query 391239 GATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || |||| ||||| || || || | |||||||| Sbjct 3383 GAATCAACCCTTCATTTGGTGCTACGTCTGAGAGG 3349 Score = 93.3 bits (102), Expect = 2e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 391095 GATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGA 391154 |||||||| |||| |||| |||||| | | || ||| ||||| || ||||| || Sbjct 3758 GATGTTGAGCCATCAGATACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGT 3699 Query 391155 ATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214 |||||||||||||| || ||| | ||||| | || || || || |||||||| || || Sbjct 3698 ATTCCTCCTGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAAGATGGCAGGACG 3639 Query 391215 TTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| || ||| | || || | || ||||| || || Sbjct 3638 CTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCATTTGGT 3595 >seq16648 Length=236 Score = 95.1 bits (104), Expect = 5e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391077 GGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAA 391136 || || || || || | |||||||| |||| |||| ||| || | ||| || Sbjct 1 GGCAAGACCATCACCTTAGATGTTGAGCCATCAGATACCATCGAGAACGTAAAAGCCAAG 60 Query 391137 ATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAA 391196 ||||| |||||||| ||||||||||||||||| |||||| | ||||| | || || || Sbjct 61 ATTCAGGATAAGGAGGGAATTCCTCCTGATCAGCAACGTCTCATTTTTGCCGGCAAGCAG 120 Query 391197 CTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTA 391256 || ||||| || || || || | ||||| || ||| | || || |||| || || || Sbjct 121 CTGGAAGACGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCAACCCTCCATTTG 180 Query 391257 GT 391258 || Sbjct 181 GT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975177999033584