Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2200 473 9e-128 seq2174 203 2e-46 >seq2200 Length=7229 Score = 473 bits (524), Expect = 9e-128 Identities = 1044/1545 (68%), Gaps = 50/1545 (3%) Strand=Plus/Plus Query 517163 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 517222 ||||||| |||||||| || || | | || | | ||| || || ||| ||||| Sbjct 1375 GCTTCTCCTATCATTCTATCTATCTCTTGTTGTGTAAGTCTCCCCTTATCATTCGTAATC 1434 Query 517223 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 517282 || || | || || || ||| || || | || || || || | ||| ||||| Sbjct 1435 GTTATTTGATTCGACTTTCCTGTGTTCTTCTCTGTTGCTGTTACGTTCATAATGCCATTA 1494 Query 517283 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 517342 ||||| | ||| |||| ||||| ||||| || || || | | ||||| ||||| || Sbjct 1495 GCATCAATATCGAATGCTACTTCTATTTGGGGAACGCCACGTGGGGCAGGAGGGATGCCG 1554 Query 517343 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 517402 |||| || ||| | ||||| ||||||||||| || | | || || || || || Sbjct 1555 TCCAGATGAAACTTCCCCAGTAAGTTATTATCTTTCGTCATTGCTCTCTCTCCTTCAAAC 1614 Query 517403 ATTTGGATAGTAACTACA---GTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTT 517458 | ||| || |||| ||| | ||||||||||| ||| |||||||||| |||| || || Sbjct 1615 ACTTGTAT--TAAC-ACACCTGGTTGATTATCTGCATATGTTGTAAATA-TCTGCGACTT 1670 Query 517459 TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTC 517518 || || || ||||| || || || || | || ||||||| ||||||||||||||| Sbjct 1671 CTTTGTTGGGATGGTTGTATTCCTCTCTATTAATTTCGTCATAACACCACCTGCTGTTTC 1730 Query 517519 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA-------GTTTTT 517571 ||| || | || | || | ||||| | || | | || ||| | ||| || Sbjct 1731 TAACCCTAACGATAATGGCGCCACATCTAATAATAATAAATCTTGCACTTGCGAGTTATT 1790 Query 517572 CA-TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 || || ||| | ||||||||||| | |||||||||||||||||| || ||| Sbjct 1791 CACTCCTTTTAAT--------ATAGCTGCTTGGACAGCAGCACCATATGCAACGGCCTCA 1842 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCT 517689 ||||| || | || | | | | || ||||||||||| | || | || |||| Sbjct 1843 TCAGGGTTTATAGATCTACACGGCTCCTTCCCATTGAAAAATTCCTGGATTAA-TTGTTG 1901 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTTAT 517748 | ||||| ||||| | ||||| || || || || | |||||| || || | || || Sbjct 1902 GATTTTAGGTATACGCGTCGATCCCCCTACCAACACCACTTCATGTACACTACGCTT-AT 1960 Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGG--TTCAAGACCCGCTCTAAACAAGTC 517806 | | ||| |||| ||||| |||||||| || || | || |||||| | || Sbjct 1961 CTATGCTTGCATCCTTCAAAACCTTTTCAACTGGAATTAACGAATT--TCTAAAATAATC 2018 Query 517807 --TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || |||| || || ||| ||||||| | || | |||| ||||||||| ||||| Sbjct 2019 AATGCACAAC--TCCTCAAATCTAGCTCTTGATAGGGAGACAGAATAATCAATCCCTTCA 2076 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924 || | ||||||| |||||| |||| ||| || || ||||||| || || || | | Sbjct 2077 AATAGCGAATCAATTTCAATTGTAGCTTGTGTGCTTGATGATAGTGTTCGCTTCGCTCTT 2136 Query 517925 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT----- 517979 |||||| ||||| || ||||| ||||| | ||| ||| | | || | ||| Sbjct 2137 TCACATTGTGTCCGTAATCTTCTCAAGGCCCTA-CTGTTTG-TGCTTATGTCTTTATTCC 2194 Query 517980 TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCAC 518039 ||| || ||||||||||||| | ||| | ||| | |||||||||||||||||| | Sbjct 2195 TATTCTTCCTCTTGAAATCTTGTATACAAAAATCTACTAAACGATTATCAAAATCTTCCC 2254 Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099 | || || | || | ||||| || || | || | || | |||||||||| | | Sbjct 2255 CCCCTAAATGTGTGTCTCCTGCTGTTGCCTTCACCTCAAATATACCATCTTCAATTGTGA 2314 Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159 |||| ||||| || || || ||||||||||| || | |||||||| ||| | Sbjct 2315 GGAGAGACACATCGAACGTGCCTCCTCCCATATCAAATATCAACACATTCATCTCTCCCT 2374 Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 || ||||| ||||||||||| | || || || || ||||| ||||| |||| | Sbjct 2375 GCCCCTTCTTATCTAGACCATACGCTATTGCTGCTGCTGTAGGTTCGTTAATTATTCGTA 2434 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 | ||||| | || || ||| |||| ||||| || || || |||||||| |||||||| | Sbjct 2435 ATACATTCAATCCTGCTATTGTTCCCGCATCCTTTGTCGCCTGTCTTTGCGAATCGTTGA 2494 Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339 ||||||| ||||| |||||||| || || | || || || || | | | || || Sbjct 2495 AATATGCGGGAACCGTAATAACTGCTTCCTTCACGTCCTTCCCCAAAAACGCCTCCGCTA 2554 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGA 518397 ||| ||||| || |||||| ||||| || || | |||| | || || |||| Sbjct 2555 TTTCCTTCATCTTCATTAAAACCATTGCAGATATCTCCTCTGCATGAAACGTT--TTGGT 2612 Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA---ACATTAATAACTTTAAA 518454 | | |||||| |||||| | | ||||||| ||| | | ||| ||| Sbjct 2613 TGCGCCTTGATAATGTACTTCTATTAAAGGTTTATCGCCAGGGCCGGCCTTCACTACAAA 2672 Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCG 518514 |||||||| ||||||||||| || ||| | |||| || | || || || |||| Sbjct 2673 TGGCCAGTGTTTCATATCTGTCTGTACAGCAGGATCATCGAATTTTCGTCCTATCAATCT 2732 Query 518515 TTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCC 518574 || |||||||| | || || ||||| | || | || | || |||||||| || Sbjct 2733 CTTCGCATCAAACACCGTGTTCTCGGGATTCCTCGCTACCTGGTTCTTTGCTGCATCCCC 2792 Query 518575 AATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 518634 | | | ||||| || ||||||| ||||| ||||| || || | ||| || ||||| Sbjct 2793 CACTAATCGCTCTGTGTCCGTAAATGCTACATACGATGGTGTCGTTCTATTCCCCTGATC 2852 Query 518635 ATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 ||| || || || || ||| | | || | |||||| |||||||| Sbjct 2853 ATTTGCTATTATCTCCACTCCATCGTTCTTCCATACTCCTACACA 2897 >seq2174 Length=7393 Score = 203 bits (224), Expect = 2e-46 Identities = 417/612 (68%), Gaps = 26/612 (4%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| |||||||| | ||| | | ||| | | | ||| || | || Sbjct 2139 ACATCAAAGGTACCACCACCAAGATCGTATACAAGAATAGT------TTTTTCATCCTTC 2086 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 |||||||| ||||| |||| ||| || ||||| |||||||||||||| | | |||||| Sbjct 2085 TTATCAAGTCCATAAGCAATAGCTGCTGCAGTAGGTTCATTAATAATACGAATAACATTT 2026 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| ||| ||||| || || |||||||| || | ||| || ||||||||| Sbjct 2025 AATCCTGCAATAGCTCCAGCATCCTTTGTAGCTTGTCTCTGAGCATCATTGAAATATGCA 1966 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || ||||||| ||| |||| | ||||||||||||| |||| || || |||| Sbjct 1965 GGTACAGTAACAACAGCATTCTTAACTTCTTTACCAAGATAATTTTCAGCAACTTCTTTC 1906 Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG---AATATTGCTTGGATTCATTT 518404 ||||||| ||||| ||| | |||| || |||||| | | | || |||| | || Sbjct 1905 ATTTTACCTAAAACCATAGCAGAAACTTCTTCTGGTGCTAACTCTT--TTGGCTGTCCTT 1848 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 ||| || || || ||||| || | |||||||| || || | || | Sbjct 1847 TGA-CTGTCACACGAATGTATGGCTTTCCGTCTTTATTAATAA-TTGAATACGGAAGCAG 1790 Query 518465 TTC-ATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 || ||||| || || || |||||||| | |||||| || ||||| |||| Sbjct 1789 CTCTTTATCTCTCTGTACTTCTTTCTCATTAAAGCGACGACCAATCAAACGTTTGACATC 1730 Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 ||| |||||||| || |||||| |||| || | || || || || ||||| ||| Sbjct 1729 AAAGATAGTATTTGTAGGATTATTTGCTGCATCATTCTTTGCAGCTTCTCCTATC----T 1674 Query 518584 TTCTGTC----TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 |||| || || | ||| || ||||| |||||| | |||||||| |||||||| | Sbjct 1673 TTCTTTCATCATCAGCAAAAGATACATAACTTGGAGTAATACGATTACCCTGATCATTTG 1614 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACA--CCTACACAACTAAAAGTTGTTCCTAA 518697 || || || || ||| | | | ||||| || ||||| | || || ||||| Sbjct 1613 GTATGATATCTACACGACCCTGT--CTATACACCCCAACACATGAGTAGGTAGTACCTAA 1556 Query 518698 ATCAATACCAAT 518709 ||||||||| || Sbjct 1555 ATCAATACCTAT 1544 Score = 149 bits (164), Expect = 5e-30 Identities = 219/310 (71%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 517475 GTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGA 517534 || ||| ||| ||||| |||| ||||| ||| || || ||||| | |||||| | |||| Sbjct 3128 GTATTTTTATTAATAACCTTGGCCATAACACCTCCAGCAGTTTCAATACCAAGGGTAAGA 3069 Query 517535 GGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATA 517594 || || ||||||| | || |||| ||| | ||| | | ||| || ||| Sbjct 3068 GGTGTAACATCAAGCAACACCATATCTTG----TGTTCCTTCGCCTGAT-----AGGATA 3018 Query 517595 GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGT 517654 |||| |||| ||| ||||| || |||||||||||||||||||||| | || || Sbjct 3017 CCTGCCTGAACAGCTGCACCGTAAGCAACAGCTTCATCAGGATTAATGCCTCTGTTGGGT 2958 Query 517655 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT 517714 | ||| || || || || | | || ||||||| | |||||||||||||| || || Sbjct 2957 TCTTTTCCGTTAAAGAATTCTTTAATAAGTTGTTGAATCTTAGGAATACGAGTAGAACCA 2898 Query 517715 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 517774 ||||| || ||||| |||| | ||||||||| | || | || ||| ||| |||| | Sbjct 2897 CCAACCAAAACAATCTCATCGATCTGTGATTTCTTAAGATCTGCATCTTCTAATACTTGT 2838 Query 517775 TCAACGGGTT 517784 | ||||||| Sbjct 2837 TTCACGGGTT 2828 Score = 105 bits (116), Expect = 5e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || |||| |||||||||||| ||||||||||| || || ||||| ||| || ||| Sbjct 2076 CCATAAGCAATAGCTGCTGCAGTAGGTTCATTAATAATACGAATAACATTTAATCCTGCA 2017 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || ||| ||| || ||||||||||| || ||||| |||||||| ||||||||| Sbjct 2016 ATAGCTCCAGCATCCTTTGTAGCTTGTCTCTGAGCATCATTGAAATATGCAGGTACAGTA 1957 Query 322364 ATAACTGCTTTATTAA 322379 | ||| || || |||| Sbjct 1956 ACAACAGCATTCTTAA 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779763041919688