Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2200 403 2e-107 seq2174 127 3e-24 >seq2200 Length=7229 Score = 403 bits (446), Expect = 2e-107 Identities = 1096/1659 (66%), Gaps = 38/1659 (2%) Strand=Plus/Plus Query 6503 GTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGAC-CTTTTTCGC 6561 || ||| |||| ||||||||| || || | | |||||||| || || || ||| Sbjct 1285 GTACCTCTCATCGAATAACAGTAATTCTCCAACGCGTTCTTCGCTTCAACTCTGTTTT-- 1342 Query 6562 GTACTT--TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCT 6619 || | |||||||||| |||||||||| || || ||| | ||| | || || ||| Sbjct 1343 -TATTGGCTTCATCTTCAGCTTTATACTTCTCTGCTTCTCCTATCATTCTATCTATCTCT 1401 Query 6620 TCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCC 6679 | || | | |||||||||||||||||||||||| || | | || || || | | | Sbjct 1402 TGTTGTGTAAGTCTCCCCTTATCATTCGTAATCGTTATTTGATTCGACTTTCCTGTGTTC 1461 Query 6680 TTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATT 6739 || ||| || |||| |||| ||| ||||| ||||||| |||||| ||| | ||| Sbjct 1462 TTCTCTGTTGCTGTTACGTTCATAATGCCATTAGCATCAATATCGAATGCTACTTCTATT 1521 Query 6740 TGTGGTGTACCCCTCGGTGCGGCTGGA---ATACCCGTTAAATCAAATGTACCAAGTAAA 6796 || || || || || || ||| ||| || || | || ||| | || ||||| Sbjct 1522 TGGGGA--ACGCCACG-TGGGGCAGGAGGGATGCCGTCCAGATGAAACTTCCCCAGTAAG 1578 Query 6797 CTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGA 6856 | ||||| ||| | | | || |||||| | |||| ||| ||| | |||||| Sbjct 1579 TTATTATCTTTCGTCATTGCTCTCTCTCCTTCAAACACTTGTATTAACACACCTGGTTGA 1638 Query 6857 TTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGA 6916 |||||| |||| || || || ||||| | ||| || || ||||| ||| Sbjct 1639 TTATCTGCATATGTTGTAAATATCTGCGACTTCTTTGTTGGGATGGTTGTATTCCTCTCT 1698 Query 6917 ATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCC 6976 || | ||||||| |||||| ||||| | || | || | || | ||| || Sbjct 1699 ATTAATTTCGTCATAACACCACCTGCTGTTTCTAACCCTAACGATAATGGCGCCACATCT 1758 Query 6977 AAGAGTAACAGGTCTTGAACA---GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGG 7033 || | ||| | ||||| || || | ||| || || |||| || || |||||| Sbjct 1759 AATAATAATAAATCTTGCACTTGCGAGTTATTCACT---CCTTTTAATATAGCTGCTTGG 1815 Query 7034 ACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCG 7093 || | || || ||||| || |||||||| ||||| || | | || | | || || || Sbjct 1816 ACAGCAGCACCATATGCAACGGCCTCATCAGGGTTTATAGATCTACACGGCTCCTTCCCA 1875 Query 7094 TTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAA 7153 || ||| | ||| | | |||||| ||||| || || || |||||||| || ||||| Sbjct 1876 TTGAAAAATTCCTGGATTAATTGTTGGATTTTAGGTATACGCGTCGATCCCCCTACCAAC 1935 Query 7154 ACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC--TCGAAGTGTTTTTTCGACAG 7211 || | ||||| || | ||||| || ||| || || || |||| | || | Sbjct 1936 ACCACTTCATGTACACTACGCTTATCTATGCTTGCATCCTTCAAAACCTTTT--CAACTG 1993 Query 7212 GTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG 7271 | | | || | || | || || |||| |||||||| | || | | | || Sbjct 1994 GAATTAACGAATTTCTAAAATAATCAATGCACAACTCCTCAAATCTAGCTCTTGATAGGG 2053 Query 7272 ATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCG 7331 | | | |||||| || || ||| ||||||||||||||| || | ||||| | | Sbjct 2054 AGACAGAATAATCAATCCCTTCAAATAGCGAATCAATTTCAATTGTAGCTTGTGTGCTTG 2113 Query 7332 AAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGT 7391 | |||| |||||||| || | ||||| || ||||| | | | ||| | || Sbjct 2114 ATGATAGTGTTCGCTTCGCTCTTTCACATTGTGTCCGTAATCTTCTCAAGGCCCTACTGT 2173 Query 7392 TACCGGAAATATCTTTCTT---ATGTTTACGTTTAAACTCTTC-AGAGAAGTGTCGAAGG 7447 | | || ||||| || || || | || || |||| | | || || | Sbjct 2174 TTGTGCTTATGTCTTTATTCCTATTCTTCCTCTTGAAATCTTGTATACAAAAATCTACTA 2233 Query 7448 AGTCTCGA--ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTT 7505 | ||| ||| |||||||| || || || ||||| || || || || || || || | Sbjct 2234 AA---CGATTATCAAAATCTTCCCCCCCTAAATGTGTGTCTCCTGCTGTTGCCTTCACCT 2290 Query 7506 CAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAA 7565 |||| ||||| ||||||| | | | || ||||| ||||| || || |||| |||| Sbjct 2291 CAAATATACCATCTTCAATTGTGAGGAGAGACACATCGAACGTGCCTCCTCCCATATCAA 2350 Query 7566 AAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCG 7625 | || | || ||| | || | | |||||||| ||||| ||||| || || || | Sbjct 2351 ATATCAACACATTCATCTCTCCCTGCCCCTTCTTATCTAGACCATACGCTATTGCTGCTG 2410 Query 7626 CCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTC 7684 | || ||||| ||||| || || || ||| |||| || || || ||| ||||||| || Sbjct 2411 CTGTAGGTTCGTTAATTATTCGTAATACA-TTCAATCCTGCTATTGTTCCCGCATCCTTT 2469 Query 7685 GTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT 7744 ||||| |||| |||||||||||| || || || || ||||| | || || ||| | || Sbjct 2470 GTCGCCTGTCTTTGCGAATCGTTGAAATATGCGGGAACCGTAATAACTGCTTCCTTCACG 2529 Query 7745 TTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATC 7804 | ||| || | | ||| ||||| || || ||||| || | | |||||| | || ||| Sbjct 2530 TCCTTCCCCAAAAACGCCTCCGCTATTTCCTTCATCTTCATTAAAACCATTGCAGATATC 2589 Query 7805 TCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCC 7864 || || || |||| ||| ||| | || | | ||| ||||| || | |||||||| Sbjct 2590 TCCTCTGCATGAAACGTTTTGGTTGCGCCTTGATAATGTACTTCTATTAAAGGTTTATCG 2649 Query 7865 GCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATC-GTCTTGGACCTGTTGGTC 7923 ||| |||| | || | | | ||| | ||||||||| ||| || || | || Sbjct 2650 CCAGGGCCGGCCTTCACTACAAATGGCCAGTGTTTCATATCTGTC-TGTACAGCAGGATC 2708 Query 7924 CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 || |||| ||| || | | ||| |||||||| || ||||| | ||| ||| | || Sbjct 2709 ATCGAATTTTCGTCCTATCAATCTCTTCGCATCAAACACCGTGTTCTCGGGATTCCTCGC 2768 Query 7984 TGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTA 8043 | |||||||| || || ||||| | | || || | |||||||| || || || Sbjct 2769 TACCTGGTTCTTTGCTGCATCCCCCACTAATCGCTC---TGTGTCCGTAAATGCTACATA 2825 Query 8044 CGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCA 8103 |||||| ||||||| |||||| || || || || || || || || | ||||| | ||| Sbjct 2826 CGATGGTGTCGTTCTATTCCCCTGATCATTTGCTATTATCTCCACTCCATCGTTCTTCCA 2885 Query 8104 GACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 || || || ||||| || || || || ||||| || || Sbjct 2886 TACTCCTACACACGAGTATGTCGTACCCAAATCGATTCC 2924 >seq2174 Length=7393 Score = 127 bits (140), Expect = 3e-24 Identities = 203/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 ||||||||||| ||||||||||| || || | | || | | || | || || || Sbjct 2142 GAAACATCAAAGGTACCACCACCAAGATCGTATACAAGAA---TAGTTTTTTCATCCTT- 2087 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||| || || || || ||||| || || || ||||||||||||||||||| | Sbjct 2086 --CTTATCAAGTCCATAAGCAATAGCTGCTGCAGTAGGTTCATTAATAATACGAATAACA 2029 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || | || ||||||| | | ||||| || || ||||||| || | ||| || || || Sbjct 2028 TTTAATCCTGCAATAGCTCCAGCATCCTTTGTAGCTTGTCTCTGAGCATCATTGAAATAT 1969 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || | | | |||| ||||| ||||| ||| || | ||| Sbjct 1968 GCAGGTACAGTAACAACAGCATTCTTAACTTCTTTACCAAGATAATTTTCAGCAACTTCT 1909 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 |||||||| | |||||| | |||| ||||| | || |||| ||| Sbjct 1908 TTCATTTTACCTAAAACCATAGCAGAAACTTCTTCTGGTGCTAACTCTTT 1859 Score = 105 bits (116), Expect = 8e-18 Identities = 186/270 (69%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 6566 TTTTC-ATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||||| ||||||||| | | || || || ||||| | ||| | || || || || Sbjct 3845 TTTTCTATCTTCATCAGCAAATTTCTCTGCCTCTTGAATCATTCTCTCTATCTCATCAGG 3786 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 | | ||| |||||||| || |||||||||||||| || || || | ||||||| Sbjct 3785 AGTAAGTCTTCCCTTATCGTTTGTAATCGTAATCTTCTCACTCTTCCCTGTTCCCTTATC 3726 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 | |||||||||| ||||| |||||||| ||||||||| || |||||| || || || Sbjct 3725 TACAGCACTTACGTTCAATATACCATTACGATCAACATCAAATGTTACATCGATCTGAGG 3666 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 | ||| | || || | ||||| || || | ||||| | || | | | || | Sbjct 3665 TACACCGCGAGGAGCAGGAGGAATGCCTGTGAGTTCAAACTTTCCTAAAAGATGATTGTT 3606 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGAC 6834 | | | | | ||||||||||||||| || Sbjct 3605 CTTTGTCATTGGACGTTCACCTTCATACAC 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634963314812320