Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2111 154 2e-32 seq372 86.0 7e-12 >seq2111 Length=7548 Score = 154 bits (170), Expect = 2e-32 Identities = 332/497 (67%), Gaps = 14/497 (3%) Strand=Plus/Minus Query 47702 ATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 ||| || | ||||||||| ||||| || || |||||||| || ||| | | ||| Sbjct 5016 ATCAGCTAGTCCTTGAACCCCAATCCCTATCGGTCTATGTTTTAGATTGCTATATCTAGC 4957 Query 47762 TTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNN 47821 |||| || ||||| | ||| |||| ||||| ||||||||| Sbjct 4956 TTCTTCTATAGGATAGTAGTTCCTATCAATAATATTATTTAGATTATTGGTAACAACTTT 4897 Query 47822 NACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT---TATA---ACAAACCTATT 47875 |||| | | ||||||||||| ||||||| | ||||| |||| ||||| | | Sbjct 4896 AACAACATGTTTTAATTTATTATAATCAAATGTTTTATTGTGTATATCTACAAAACGAGG 4837 Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 || | || |||||||||||||||||||||| ||| | ||| | ||||||||||| || Sbjct 4836 GAGAGATAATGATGCTAGATTACATACAGCTATCTCTTCAGGACTTGTATATTGTATAAT 4777 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAA-ATTTTGATGATTATTNNNNTTGT 47994 ||| ||||| ||| | | ||| |||||| || || ||||| | | | Sbjct 4776 TTCGCAACATAAATTGCTCGAACGTATA-CACCCAAGATGTTTTTGATTGCTCTTTCTAT 4718 Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 | || || |||||||| | |||| | |||||||| |||||||| || | || | ||||| Sbjct 4717 TGCAAGCATCCTTGTATAACATATACGGTGTTCCTGTTTCTATTTGTGCTTGTAAGATAG 4658 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA--TTT 48112 | ||| | | || |||||||| ||| || | | || ||| || ||| Sbjct 4657 AAAACCATAAACTCTGCGCCTTTATTGTCTTTCTTCCTCTTCTCTCTCTTTCATATCTTT 4598 Query 48113 AGTATATAACTTCTC-AAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171 |||| | ||||| |||||| || || |||| | ||| || || ||||| || | Sbjct 4597 CGTATCT---TTCTCTAAATTCTTCTCCCCACACTTCCGTTAAACCGGGGCATTCGTTCG 4541 Query 48172 GACACATCAATGACCAA 48188 |||||||||| | |||| Sbjct 4540 GACACATCAAAGTCCAA 4524 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || |||||||| || || | || | || | || ||||| |||||| |||||||| || Sbjct 7122 TCTACAGTAAATTTGATGGCATCAACAGCCGCTTGTGTTCTTAAATAGTACATACCTGTT 7063 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | ||| |||||||||| ||||||||| ||| ||| || | || | || | Sbjct 7062 TTCAGTCCTGCTCTCCATCCATGAAAATGCATAGTAGATAACTTTGCGTATGTGGGATTA 7003 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 ||||| ||||| || ||||| ||||| || ||| |||| || |||||| Sbjct 7002 ATCATATGTATATTTAGCGATTGGGATTGATCTATGTATGGTGCTCTGTCTATCGCCATA 6943 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 || | |||| ||||| ||| ||||||||||||||||| | | ||| || |||| | Sbjct 6942 TCAACAATACATTTTTGTTTTATTTCCCATACTGTTTTATATAAATCTTTTATATCTTGT 6883 Query 47217 GGGA 47220 |||| Sbjct 6882 GGGA 6879 >seq372 Length=768 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || || ||||| ||||| | ||||||||||||||| ||| |||||| | | | Sbjct 47 CTTGCAGCAAAGAATGCGAGTACATGTTTAATAAAGTGTCTTTCATTATCATCGAGTCGA 106 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 ||||||||| | |||| | |||||||||||| ||||||| || ||||| ||| Sbjct 107 GCCCAATCATTTAAATCTGCCTGCATGTCTACTTCTTCAGCTGTCCAGAAGGAAGCTTCT 166 Query 19492 GCTTTTTTATACATGTTCCATA 19513 ||||| || ||||| | ||||| Sbjct 167 GCTTTCTTGTACATCTCCCATA 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561958801266720