Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2200 219 3e-51 seq2174 219 3e-51 seq16648 111 1e-18 seq2256 111 1e-18 >seq2200 Length=7229 Score = 219 bits (242), Expect = 3e-51 Identities = 456/675 (68%), Gaps = 8/675 (1%) Strand=Plus/Minus Query 551919 TGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCA 551978 || |||||||| || ||| | || ||||| | || ||| | || |||||| | ||||| Sbjct 2141 TGTGAAAGAGCGAAGCGAACACTATCATCAAGCACACAAGCTACAATTGAAATTGATTCG 2082 Query 551979 TTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGT 552038 ||||||| || ||||||||| | | | || || || | |||||| || | || Sbjct 2081 CTATTTGAAGGGATTGATTATTCTGTCTCCCTATCAAGAGCTAGATTTGAGGAGTTGTGC 2022 Query 552039 TCTGATCTCTTTAGAAAAAC---AATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAG 552095 |||| |||||||| | |||| ||||| ||| | ||||| | ||| ||| Sbjct 2021 ATTGATTATTTTAGAAATTCGTTAATT---CCAGTTGAAAAGGTTTTGAAGGATGCAAGC 1965 Query 552096 ATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAA 552155 || ||||| | ||||||||| | ||| | || || ||||| || | || |||||| Sbjct 1964 ATAGATAAGCGTAGTGTACATGAAGTGGTGTTGGTAGGGGGATCGACGCGTATACCTAAA 1905 Query 552156 ATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCC 552214 || | || | | || || ||||||||| || | | | | | || || Sbjct 1904 ATCCAACAATTAATCCAGGAATT-TTTCAATGGGAAGGAGCCGTGTAGATCTATAAACCC 1846 Query 552215 AGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGA 552274 |||||||| ||||| |||||||| || | ||||||||||| | ||| | | | Sbjct 1845 TGATGAGGCCGTTGCATATGGTGCTGCTGTCCAAGCAGCTATATTAAAAGGAGTGAATAA 1786 Query 552275 TGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAAC 552334 || | ||| || | || | ||||||| | || |||| | || |||||||| Sbjct 1785 CTCGCAAGTGCAAGATTTATTATTATTAGATGTGGCGCCATTATCGTTAGGGTTAGAAAC 1726 Query 552335 AGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATC 552394 || || ||| ||||||| || | || || || ||||| || || || || || || Sbjct 1725 AGCAGGTGGTGTTATGACGAAATTAATAGAGAGGAATACAACCATCCCAACAAAGAAGTC 1666 Query 552395 TCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGG 552454 | ||||| | || ||| ||||||||||| | | ||| ||| ||| | |||||||| Sbjct 1665 GCAGATATTTACAACATATGCAGATAATCAACCAGGTGTGTTAATACAAGTGTTTGAAGG 1606 Query 552455 AGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCC 552514 ||| ||| | | || ||||||||||| ||| || | ||| || | || || || || Sbjct 1605 AGAGAGAGCAATGACGAAAGATAATAACTTACTGGGGAAGTTTCATCTGGACGGCATCCC 1546 Query 552515 TCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 |||||| || ||||| || || ||||| ||||| | |||||||| ||||| ||||| || Sbjct 1545 TCCTGCCCCACGTGGCGTTCCCCAAATAGAAGTAGCATTCGATATTGATGCTAATGGCAT 1486 Query 552575 TTTGAATGTGACTGC 552589 | |||| || || || Sbjct 1485 TATGAACGTAACAGC 1471 Score = 178 bits (196), Expect = 1e-38 Identities = 373/549 (68%), Gaps = 13/549 (2%) Strand=Plus/Minus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 |||| || ||||| || || ||||| ||||| || || ||| | || | | ||| | Sbjct 2926 TAGGAATCGATTTGGGTACGACATACTCGTGTGTAGGAGTATGGAAGAACGATGGAGTGG 2867 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 | || || || |||||||| || || ||||| || ||||| ||||| | || ||||| | Sbjct 2866 AGATAATAGCAAATGATCAGGGGAATAGAACGACACCATCGTATGTAGCATTTACGGACA 2807 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTA 550175 | || | ||||| || ||||||||||| | || | | | ||||| || || Sbjct 2806 CAGAGCGATTAGTGGGGGATGCAGCAAAGAACCAGGTAGCGAGGAATCCCGAGAACACGG 2747 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 | |||||||| || | || || ||| ||| || ||||| | |||| ||| |||||| Sbjct 2746 TGTTTGATGCGAAGAGATTGATAGGACGAAAATTCGATGATCCTGCTGTACAGACAGATA 2687 Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAA---TGTTTCTGG---AAAACCTTATATTGAAG 550289 |||| || ||||| || | || || | |||| ||||||| || |||| Sbjct 2686 TGAAACACTGGCCATT---TGTAGTGAAGGCCGGCCCTGGCGATAAACCTTTAATAGAAG 2630 Query 550290 CTAC-TCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTT 550347 ||| | || |||| | ||| | ||||| |||| | || || | |||||||| Sbjct 2629 -TACATTATCAAGGCGCAACCAAA-ACGTTTCATGCAGAGGAGATATCTGCAATGGTTTT 2572 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 |||||| ||||| ||| ||| || ||| | || | || || | ||| ||||| || Sbjct 2571 AATGAAGATGAAGGAAATAGCGGAGGCGTTTTTGGGGAAGGACGTGAAGGAAGCAGTTAT 2512 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || |||||||| || || || ||| | || || || || ||||| ||| || Sbjct 2511 TACGGTTCCCGCATATTTCAACGATTCGCAAAGACAGGCGACAAAGGATGCGGGAACAAT 2452 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||| | ||||| | || || || || |||||||| || || ||| | || ||||| Sbjct 2451 AGCAGGATTGAATGTATTACGAATAATTAACGAACCTACAGCAGCAGCAATAGCGTATGG 2392 Query 550528 ACTTGATAA 550536 || ||||| Sbjct 2391 TCTAGATAA 2383 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATT-TTAATAACATTGAGTCC 361761 |||||||| |||| || || ||||| ||||||||||||||| |||| ||||| | ||| Sbjct 2389 AGACCATACGCTATTGCTGCTGCTGTAGGTTCGTTAATTATTCGTAAT-ACATTCAATCC 2447 Query 361762 CGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAAC 361821 |||||| || ||||| || || || | ||| | ||| || |||||||| ||||| Sbjct 2448 TGCTATTGTTCCCGCATCCTTTGTCGCCTGTCTTTGCGAATCGTTGAAATATGCGGGAAC 2507 Query 361822 AGTAATCACTGCTT 361835 ||||| ||||||| Sbjct 2508 CGTAATAACTGCTT 2521 >seq2174 Length=7393 Score = 219 bits (242), Expect = 3e-51 Identities = 382/551 (69%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 549989 GTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGT 550048 |||| |||||||| |||||||| || || || |||||||| || | | | ||| Sbjct 1538 GTAGTGATAGGTATTGATTTAGGTACTACCTACTCATGTGTTGGGGTGTATAGACAGGGT 1597 Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || || || | |||||||| ||||| | | ||||||| |||||| ||||| Sbjct 1598 CGTGTAGATATCATACCAAATGATCAGGGTAATCGTATTACTCCAAGTTATGTATCTTTT 1657 Query 550109 ACGGAAACTGAACATTTAGTT-GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTAC 550167 | || |||| | || | || || || ||||| || | || | ||||||||| Sbjct 1658 GCTGATGATGAA-AGAAAGATAGGAGAAGCTGCAAAGAATGATGCAGCAAATAATCCTAC 1716 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 |||||||| ||||||| |||||||| ||||| | | |||||||| || || Sbjct 1717 AAATACTATCTTTGATGTCAAACGTTTGATTGGTCGTCGCTTTAATGAGAAAGAAGTACA 1776 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | ||||| ||| || | |||| ||||| ||||| || || ||| Sbjct 1777 GAGAGATAAAGAGCTGCTTCCGTATTCAATTATTAATAAAGACGGAAAGCCATACATTCG 1836 Query 550288 AGCTAC--TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | || ||| ||||| ||| | || |||||||| || |||| |||||||| Sbjct 1837 TGTGACAGTCA--AAGGACAGCCAAAAGAGTTAGCACCAGAAGAAGTTTCTGCTATGGTT 1894 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 ||| ||||||||| || || || | ||||| ||||||||| | |||| || Sbjct 1895 TTAGGTAAAATGAAAGAAGTTGCTGAAAATTATCTTGGTAAAGAAGTTAAGAATGCTGTT 1954 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | |||||||| |||||||| ||||| | || | |||||||| || ||||||||| | Sbjct 1955 GTTACTGTACCTGCATATTTCAATGATGCTCAGAGACAAGCTACAAAGGATGCTGGAGCT 2014 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| ||| | |||||| |||||||||| |||||||||||||| || || |||| ||| Sbjct 2015 ATTGCAGGATTAAATGTTATTCGTATTATTAATGAACCTACTGCAGCAGCTATTGCTTAT 2074 Query 550526 GGACTTGATAA 550536 ||||||||||| Sbjct 2075 GGACTTGATAA 2085 >seq16648 Length=236 Score = 111 bits (122), Expect = 1e-18 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || |||||||| || | ||| ||||| ||||| ||| |||||||||| || || Sbjct 194 CTAAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGACAGCGTC 135 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || ||||| || || || ||||||||||| || | ||||||||||||||||||||| Sbjct 134 CTGCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGGAATTCCC 75 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || ||||| ||||| || |||||| ||| || ||||| Sbjct 74 TCCTTATCCTGAATCTTGGCTTTTACGTTCTCGATGGTATC 34 >seq2256 Length=33050 Score = 111 bits (122), Expect = 1e-18 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || |||||||| || | |||||||||| ||||| ||| |||||||||| || || Sbjct 3583 CTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTC 3642 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || |||||| || || || ||||||||||| || | ||||||||||||||||| || Sbjct 3643 CTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCC 3702 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || || || ||||| ||| || || |||||| ||||| Sbjct 3703 TCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTATC 3743 Score = 98.7 bits (108), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || | ||||||||| |||||| ||| |||||||||| || || Sbjct 3352 CTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTC 3411 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || |||||| | || || ||||||||||| || | ||||||||||||||||| || Sbjct 3412 CTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCC 3471 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 || || || ||||| || || || |||||| ||||| | || ||| || | Sbjct 3472 TCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACA-TCTAA 3530 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAA 563465 || | || || ||||| ||||| || ||||| Sbjct 3531 GGTGATCGTCTTGCCAGTCAGAGTCTTCACGAA 3563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028167021480520