Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2256 127 2e-24 >seq2256 Length=33050 Score = 127 bits (140), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||||| || ||||||||||| |||||||| || || |||||||| | Sbjct 3346 CCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGAC 3405 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| ||||| ||||| || ||||| |||| |||||| ||||| || ||| Sbjct 3406 AGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3465 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || ||||| || || ||| | || | || || || | || || Sbjct 3466 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACA 3525 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC---AAATATCTGCATG 101470 || | |||| ||| ||||| || | ||| || || || ||||||||| Sbjct 3526 TCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || |||||||||||||| ||||| || || |||||||| | Sbjct 3577 CCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 3636 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| |||| ||||| || ||||| |||| |||||| ||||| || ||| Sbjct 3637 AGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3696 Query 101363 ATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || ||||| ||| Sbjct 3697 ATACCCTCCTTGTCCTGAATCTTT 3720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396175296781236