Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2256 114 1e-20 seq16648 96.9 3e-15 seq3399 93.3 3e-14 >seq2256 Length=33050 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| || || || | ||||||||| || || ||||| ||||| ||||||||||| Sbjct 3345 GCCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGA 3404 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || ||||||||||| |||||||| ||||| ||||| ||||| | || Sbjct 3405 CAGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3464 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| |||||| || ||| | | | ||||| | ||| || Sbjct 3465 AATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAAC 3524 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC---AAAAATCTGCAT 48766 || | || ||||| || || |||| ||| || || || |||||||| Sbjct 3525 ATCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCAT 3575 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||||||||| || || |||||| ||||| ||||||||||| Sbjct 3576 GCCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 3635 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || |||| |||||| |||||||| ||||| ||||| ||||| | || Sbjct 3636 CAGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3695 Query 48659 AACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||||||||| ||||||| Sbjct 3696 AATACCCTCCTTGTCCTGAATCTTT 3720 >seq16648 Length=236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||||||||| || || |||||| ||||| ||||||||||| Sbjct 201 GCCACCTCTAAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGA 142 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| |||| |||||| |||||||| || || || || ||||| | || Sbjct 141 CAGCGTCCTGCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGG 82 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTAC 48691 || |||||||| || |||||| |||||| Sbjct 81 AATTCCCTCCTTATCCTGAATCTTGGCTTTTAC 49 >seq3399 Length=84741 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||||| || || ||||| ||||| || || ||| ||| | || || Sbjct 39815 ACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39874 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || ||||| || || | |||| ||||| ||||| Sbjct 39875 AGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGG 39934 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | |||||| || | || || ||||| Sbjct 39935 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTC 39994 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || |||||||||||||| Sbjct 39995 CCCGTCAGTGTCTTCACAAAAATCTGCAT 40023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380838488131404