Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2200 221 8e-52 seq2174 194 1e-43 seq2256 120 2e-21 seq16648 104 2e-16 seq19714 102 5e-16 seq3399 96.9 2e-14 >seq2200 Length=7229 Score = 221 bits (244), Expect = 8e-52 Identities = 558/842 (66%), Gaps = 15/842 (2%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 ||||||||| | || || | |||||||| ||||| ||||| | || || |||||| Sbjct 2306 GAAGATGGTATATTTGAGGTGAAGGCAACAGCAGGAGACACACATTTAGGGGGGGAAGAT 2247 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTT--- 475456 ||||||||| | | ||| | ||| | |||||||||||||||| |||| | Sbjct 2246 TTTGATAATCGTTTAGTAGATTTTTGTATACAAGATTTCAAGAGGAAGAATAGGAATAAA 2187 Query 475457 GATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAG 475516 || | ||| || || || ||| | | | || |||||| | || ||| Sbjct 2186 GACATAAGCACAAACAGTAGGGCCTTGAGAAGATTACGGACACAATGTGAAAGAGCGAAG 2127 Query 475517 CGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATT 475576 ||| | || || || || ||| |||| ||||| ||||||| || |||||||| ||| Sbjct 2126 CGAACACTATCATCAAGCACACAAGCTACAATTGAAATTGATTCGCTATTTGAAGGGATT 2067 Query 475577 GATTATAATACTCTTATTA-CAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635 |||||| | ||| || |||| |||| |||||| || | || |||| ||||| Sbjct 2066 GATTATTCTG-TCTCCCTATCAAGAGCTAGATTTGAGGAGTTGTGCATTGATTATTTTAG 2008 Query 475636 AAAAAC---AATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACA 475692 ||| | |||| || |||||| | ||| | | ||| | | | || || Sbjct 2007 AAATTCGTTAATT---CCAGTTGAAAAGGTTTTGAAGGATGCAAGCATAGATAAGCGTAG 1951 Query 475693 AGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCT 475752 || |||||| | || | ||||| || || || | || || ||||| | || | | Sbjct 1950 TGTACATGAAGTGGTGTTGGTAGGGGGATCGACGCGTATACCTAAAATCCAACAATTAAT 1891 Query 475753 TTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || ||| ||||| || || | | | |||| |||||||| || ||||| Sbjct 1890 CCAGGAATTTTTCAATGGGAAGGAGCCGTGTAGATCTATAAACCCTGATGAGGCCGTTGC 1831 Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG--TCAATCAGACGAGAAACTAAAT 475870 |||||| |||||||||||||||||||| ||| ||| | ||| | || || | | Sbjct 1830 ATATGGTGCTGCTGTCCAAGCAGCTATATTAAAAGGAGTGAATAACTCGC--AAGTGCAA 1773 Query 475871 AATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT 475930 || | || | | || || | ||| | || ||||| | ||||||| || || || Sbjct 1772 GATTTATTATTATTAGATGTGGCGCCATTATCGTTAGGGTTAGAAACAGCAGGTGGTGTT 1713 Query 475931 ATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCC 475990 ||||| || | || || || ||||| | |||||| || || || | ||||| | Sbjct 1712 ATGACGAAATTAATAGAGAGGAATACAACCATCCCAACAAAGAAGTCGCAGATATTTACA 1653 Query 475991 ACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTC 476050 || ||| | ||||||||| || ||| || ||| | |||||||| || ||| | | Sbjct 1652 ACATATGCAGATAATCAACCAGGTGTGTTAATACAAGTGTTTGAAGGAGAGAGAGCAATG 1593 Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || |||||||||||| ||| || | ||| |||| || || || |||||||| || | Sbjct 1592 ACGAAAGATAATAACTTACTGGGGAAGTTTCATCTGGACGGCATCCCTCCTGCCCCACGT 1533 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || ||||| ||||| ||||| | || ||||||||||| ||||| ||| | || || || Sbjct 1532 GGCGTTCCCCAAATAGAAGTAGCATTCGATATTGATGCTAATGGCATTATGAACGTAACA 1473 Query 476171 GC 476172 || Sbjct 1472 GC 1471 Score = 215 bits (238), Expect = 3e-50 Identities = 381/549 (69%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || || ||||| || || || ||| ||||||| || ||| | || | | ||| || Sbjct 2924 GGAATCGATTTGGGTACGACATACTCGTGTGTAGGAGTATGGAAGAACGATGGAGTGGAG 2865 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 ||||| || ||||| || || |||||||| |||||||| ||||| | ||||| || || Sbjct 2864 ATAATAGCAAATGATCAGGGGAATAGAACGACACCATCGTATGTAGCATTTACGGACACA 2805 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | | | || ||||| || || | || | || ||||| | || || | Sbjct 2804 GAGCGATTAGTGGGGGATGCAGCAAAGAACCAGGTAGCGAGGAATCCCGAGAACACGGTG 2745 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||| || |||||||| || || || || |||||| | |||| || | |||||| Sbjct 2744 TTTGATGCGAAGAGATTGATAGGACGAAAATTCGATGATCCTGCTGTACAGACAGATATG 2685 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGT---TGGTGGTAAACCATATATAGAAG--CAA 474629 || ||||| ||| |||| | ||| | |||||| | ||||||| || Sbjct 2684 AAACACTGGCCATTTGTAGTGAAGGCCGGCCCTGGCGATAAACCTTTAATAGAAGTACAT 2625 Query 474630 TA-CACGCAGGTGAAACTAAACAATTTTCAC-CGGAACAAATTTCTTCAATGGTTTTAGC 474687 || || ||| | ||| ||| | ||||| | || | || ||| ||||||||||| Sbjct 2624 TATCA---AGGCGCAACCAAA-ACGTTTCATGCAGAGGAGATATCTGCAATGGTTTTAAT 2569 Query 474688 CAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 || ||||| ||| ||| | | | | || | || || | || ||||| ||||| Sbjct 2568 GAAGATGAAGGAAATAGCGGAGGCGTTTTTGGGGAAGGACGTGAAGGAAGCAGTTATTAC 2509 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 ||||| |||||||| || ||||| ||| | || || || || |||||||||| ||| || Sbjct 2508 GGTTCCCGCATATTTCAACGATTCGCAAAGACAGGCGACAAAGGATGCGGGAACAATAGC 2449 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||| | ||||| ||||| || ||||| ||||| |||||||| ||| | || |||||||| Sbjct 2448 AGGATTGAATGTATTACGAATAATTAACGAACCTACAGCAGCAGCAATAGCGTATGGTCT 2389 Query 474868 TGATAAGAA 474876 |||||||| Sbjct 2388 AGATAAGAA 2380 >seq2174 Length=7393 Score = 194 bits (214), Expect = 1e-43 Identities = 372/546 (68%), Gaps = 2/546 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || |||||||||||||| ||||| ||| ||||| | || | | | ||| ||| Sbjct 1544 ATAGGTATTGATTTAGGTACTACCTACTCATGTGTTGGGGTGTATAGACAGGGTCGTGTA 1603 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || | ||||| || |||||| | | || ||| ||||| |||||| |||| Sbjct 1604 GATATCATACCAAATGATCAGGGTAATCGTATTACTCCAAGTTATGTATCTTTTGCTGAT 1663 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 |||| || ||||| ||||| || || | || ||| ||||||| |||||| Sbjct 1664 GATGAAAGAAAGATAGGAGAAGCTGCAAAGAATGATGCAGCAAATAATCCTACAAATACT 1723 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || ||||||| ||| | |||||||||||| ||| |||| | || || ||| Sbjct 1724 ATCTTTGATGTCAAACGTTTGATTGGTCGTCGCTTTAATGAGAAAGAAGTACAGAGAGAT 1783 Query 474572 AT-GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAAT 474630 | | | | | | || | | || ||| | || || ||||| || | | Sbjct 1784 AAAGAGCTGCTTCCGTATTCAATT-ATTAATAAAGACGGAAAGCCATACATTCGTGTGAC 1842 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 | | ||| | | ||| | || |||| ||| || ||||| | |||||||||| || Sbjct 1843 AGTCAAAGGACAGCCAAAAGAGTTAGCACCAGAAGAAGTTTCTGCTATGGTTTTAGGTAA 1902 Query 474691 AATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGT 474750 ||||||| || || |||||||| ||||||| | |||| || ||||||| Sbjct 1903 AATGAAAGAAGTTGCTGAAAATTATCTTGGTAAAGAAGTTAAGAATGCTGTTGTTACTGT 1962 Query 474751 TCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGG 474810 || |||||||| |||||| |||| | ||||| || || ||||| ||| |||||||| Sbjct 1963 ACCTGCATATTTCAATGATGCTCAGAGACAAGCTACAAAGGATGCTGGAGCTATTGCAGG 2022 Query 474811 TCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGA 474870 | |||||| | ||||||||||||||||| || ||||| || |||||||||| ||||| Sbjct 2023 ATTAAATGTTATTCGTATTATTAATGAACCTACTGCAGCAGCTATTGCTTATGGACTTGA 2082 Query 474871 TAAGAA 474876 |||||| Sbjct 2083 TAAGAA 2088 Score = 116 bits (128), Expect = 2e-20 Identities = 250/371 (67%), Gaps = 11/371 (3%) Strand=Plus/Plus Query 475647 AACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTG 475706 ||||||| ||||||| | |||| | | ||| | |||||||| || |||| |||| Sbjct 2828 AACCCGTGAAACAAGTATTAGAAGATGCAGATCTTAAGAAATCACAGATCGATGAGATTG 2887 Query 475707 TTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTA 475766 || | || || ||||| || | ||||| || || | || | || | || |||| Sbjct 2888 TTTTGGTTGGTGGTTCTACTCGTATTCCTAAGATTCAACAACTTATTAAAGAATTCTTTA 2947 Query 475767 ATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTG 475826 | || ||| | || | | | |||||||||||||||||||| || || || |||| Sbjct 2948 ACGGAAAAGAACCCAACAGAGGCATTAATCCTGATGAAGCTGTTGCTTACGGTGCAGCTG 3007 Query 475827 TCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTG 475886 | || |||| ||| ||||||| | || ||| | | |||| || | ||| Sbjct 3008 TTCAGGCAGGTATCCTATCAGGCGA--------AGGAAC-ACAAGATATGGTGTTGCTTG 3058 Query 475887 ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTG 475946 | || || || ||| | | ||| ||||||| | |||||| ||||| | || ||||| Sbjct 3059 ATGTTACACCTCTTACCCTTGGTATTGAAACTGCTGGAGGTGTTATGGCCAAGGTTATTA 3118 Query 475947 ACAGAAATACTCCTATCCCATGCAAAAAA-TCAAAAGTATTTTCCACTTATTCTGATAAT 476005 | | ||||||| ||| || | ||||||| || || ||| || || || ||||| ||| Sbjct 3119 ATAAAAATACTGTTATACC-TACAAAAAAGACACAAACATTCTCTACATACTCTGACAAT 3177 Query 476006 CAAACAACTGT 476016 ||| | |||| Sbjct 3178 CAATCCGCTGT 3188 >seq2256 Length=33050 Score = 120 bits (132), Expect = 2e-21 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 ||||||||| || | |||||| ||| ||||| || || ||||||| || || || Sbjct 3585 AAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 3644 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 | |||||| || ||||| || |||||||| ||||| || |||||||||||||| || || Sbjct 3645 GCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTC 3704 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||| ||||||||| || ||| ||||| ||||| Sbjct 3705 CTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTATC 3743 Score = 114 bits (126), Expect = 8e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || || | |||||| || |||||| || || ||||||| || || ||| Sbjct 3355 AGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTG 3414 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| | ||||| || |||||||| ||||| || |||||||||||||| || ||| Sbjct 3415 CCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCC 3474 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| |||||||| || ||| ||||| ||||| | || | || || | ||| Sbjct 3475 TTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAA-CATCTAAGGT 3533 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || || |||||||| ||||| Sbjct 3534 GATCGTCTTGCCAGTCAGAGTCTTCACGAA 3563 >seq16648 Length=236 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 ||||||||| || | ||| || || ||||| || || ||||||| || || || Sbjct 192 AAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 133 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 | ||||| || ||||| || |||||||| |||||||| ||||||||||||||||| || Sbjct 132 GCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGGAATTCCCTC 73 Query 480674 CTTGTCTTGAATCTT 480688 ||| || |||||||| Sbjct 72 CTTATCCTGAATCTT 58 >seq19714 Length=2676 Score = 102 bits (112), Expect = 5e-16 Identities = 284/429 (66%), Gaps = 15/429 (3%) Strand=Plus/Plus Query 361485 CAAATCTTCCTGATCTTTTTACTGCTGGATCTAATAATTCTAATCTATTTGTTATACCGA 361544 ||||||| || | ||| | ||| ||||| || ||||||| |||||| || || | Sbjct 680 CAAATCTACCAGGTCTAAGAAGAGCTTCATCTATTAGATCTAATCGATTTGTCATTCCTA 739 Query 361545 TACAAATAAAATTATTAAATTGTTCTAAACCATCCATTTCTGCTAAAAATTGATTTACAA 361604 | | | | |||||| || | | |||||| || | || ||| ||||||||||||| Sbjct 740 TTAATAATATATTATTTAAACCATTAACACCATCAATCTTTGATAATAATTGATTTACAA 799 Query 361605 CAGAATCTCTTAC---TGGACTTGAACTATTACCTTCTCTTGAAGGTAACA--TGGCATC 361659 |||| ||| |||| || | | | ||| || ||||| | | ||| | ||||| Sbjct 800 CAGAGTCTGTTACACCTGCTCCTCCAGGATTCGCTCCTCTTT--GTTTACAAATTGCATC 857 Query 361660 AATTTCATCAATTACTACCATATATGTAGGAGATTTATCGCCATATTTTTTCCATGCATC 361719 | ||||||| || | |||| | | || | | |||| | ||| | | | || Sbjct 858 TAACTCATCAAATATAATTATATGTAAACCTGAATCAGCGCCTTTCTTTCTTTCTTCTTC 917 Query 361720 TTTAGCGGCTTTAAAAATATCTCTAACATTTGATTCAGATTCTCCAACGTATTTATTAAA 361779 || || | ||||| | |||| |||||| |||||||| ||| ||||||||||| || Sbjct 918 TTCTGCCTCCTTAAATAATGCTCTTACATTTTCTTCAGATTGTCCTACGTATTTATTTAA 977 Query 361780 AATTTCTGGTCCTGACATTAATCTAAATTGATCACCTTCACAACCAAGTAATTTTCCTAA 361839 ||||| || || ||| | | | | || | | | | |||| ||| |||| Sbjct 978 TATTTCGGGACC---GTTTACTATCTTTGGCTCTCTTGC---ATTAAGTGCTTTCCCTAT 1031 Query 361840 ATTACGTGCAACTGATGTTTTTCCTGTCCCAGGAGGACCATAGAA-AATAATACCTTTTA 361898 | ||||| | | ||||||||||| || || |||||||| || ||||| ||| |||| Sbjct 1032 TTGGCGTGCTATTAGAGTTTTTCCTGTTCCTGGCGGACCATACAATAATAA-ACCCTTTA 1090 Query 361899 CTGGTTTTA 361907 | |||||| Sbjct 1091 CATGTTTTA 1099 >seq3399 Length=84741 Score = 96.9 bits (106), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || ||||| || || || || || | ||||||||| ||| |||| Sbjct 39817 CAAG-TGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAA 39875 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | ||||||||||| || || || || || || || |||||||| || || ||||| || | Sbjct 39876 GCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGA 39935 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 |||| || ||| ||| ||||| || | | || ||||| |||||||| | Sbjct 39936 TCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCC 39995 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || ||||| || Sbjct 39996 CCGTCAGTGTCTTCACAAAAATCTG 40020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267263480699504