Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3399 111 3e-19 seq16648 87.8 3e-12 seq2256 87.8 3e-12 >seq3399 Length=84741 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || |||||||| | ||||| ||| || | || ||||| || || |||| | Sbjct 39841 AATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTGCTTTCCAGCGAAGATTAGGCG 39900 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || ||||| || || ||||| || || || |||| || | |||| ||||| Sbjct 39901 CTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGT 39960 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||||| ||| || || || ||||||||||| || || || || || ||||| || || Sbjct 39961 GTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGTCAGTGTCTTCACAAAAATCTG 40020 Query 193358 CATTTT 193363 |||||| Sbjct 40021 CATTTT 40026 >seq16648 Length=236 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || |||| ||| | || | |||||| ||| || || || Sbjct 203 ATGCCACCTCTAAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCA 144 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| || || || | || || ||||||||||| | | || ||||||||| Sbjct 143 GACAGCGTCCTGCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGA 84 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || || |||| ||||| || || ||||| || | |||| Sbjct 83 GGAATTCCCTCCTTATCCTGAATCTTGGCTTTTACGTTCTCGATGGTATCTGATGGCTCA 24 Query 193311 ACTTCTAGAGTTATAGTTTTACC 193333 || |||| || || || || || Sbjct 23 ACATCTAAGGTGATGGTCTTGCC 1 >seq2256 Length=33050 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||||| || || |||| ||| | || | ||||| ||| || || || || Sbjct 3346 CCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGAC 3405 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||| || ||| || || || || ||||||||||| | | ||| ||||||||||| Sbjct 3406 AGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3465 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || || || || || | || | ||| ||| ||||| || | |||||| Sbjct 3466 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACA 3525 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 |||| || || || || || || || || || || || Sbjct 3526 TCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAA 3563 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || |||| ||| | |||| |||||| ||| || || || Sbjct 3574 ATGCCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCA 3633 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| || ||| || | || || ||||||||||| | | ||| ||||||||| Sbjct 3634 GACAGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGA 3693 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | || | ||| ||| ||||| || | |||| Sbjct 3694 GGAATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTATCTGATGGCTCA 3753 Query 193311 ACTTCTA 193317 || |||| Sbjct 3754 ACATCTA 3760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899414327223360