Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq3360 102 4e-17 >seq3360 Length=4818 Score = 102 bits (112), Expect = 4e-17 Identities = 117/154 (76%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 62060 GGTTCCATAGCTCAAGTTGGTTAGAGCACTCGGCTCATAACCGAGAGTGTC-CAGGTTCG 62118 ||| | |||||||| ||||||||||||| |||||| |||||||| || ||| | |||||| Sbjct 3715 GGTCCTATAGCTCA-GTTGGTTAGAGCATTCGGCTAATAACCGAAAG-GTCGCCGGTTCG 3772 Query 62119 AAACCGGGTGGAACCACCAAATTGTCTCATAGCTCAGTAGGTCAGAGCGTTCCCCTGATA 62178 | |||| ||| ||| || ||| |||||||||| ||| ||||| ||| || ||| Sbjct 3773 AGCCCGGTTGGGACC-----ATNGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATA 3827 Query 62179 AGGGAAAGGTCACTAGTTCGAATCTAGTTGAGAC 62212 | |||||||| | |||||| | |||| ||| Sbjct 3828 ACCGAAAGGTCGCCGGTTCGAGCCCGGTTGGGAC 3861 Score = 82.4 bits (90), Expect = 4e-11 Identities = 111/154 (72%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 62060 GGTTCCATAGCTCAAGTTGGTTAGAGCACTCGGCTCATAACCGAGAGTGTC-CAGGTTCG 62118 ||| | |||||||| ||||||||||||| |||||| |||||||| || ||| | |||||| Sbjct 3162 GGTCCTATAGCTCA-GTTGGTTAGAGCATTCGGCTAATAACCGAAAG-GTCGCCGGTTCG 3219 Query 62119 AAACCGGGTGGAACCACCAAATTGTCTCATAGCTCAGTAGGTCAGAGCGTTCCCCTGATA 62178 | ||||| | ||| |||||||||| ||| ||||| ||| || ||| Sbjct 3220 AGACCGG--------------TNGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATA 3265 Query 62179 AGGGAAAGGTCACTAGTTCGAATCTAGTTGAGAC 62212 | |||||||| | |||||| | |||| ||| Sbjct 3266 ACCGAAAGGTCGCCGGTTCGAGACCGGTTGGGAC 3299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230528805694252