Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3399 113 3e-20 seq2256 102 6e-17 >seq3399 Length=84741 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| ||| ||| || |||||||| || || | | || | |||||| Sbjct 39815 ACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39874 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || || ||||| | || | | ||||| || || ||||||||||||||||| || Sbjct 39875 AGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGG 39934 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| |||| | |||||| ||| | || || || || ||||||||||| Sbjct 39935 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTC 39994 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | || || ||||| ||||||||||| Sbjct 39995 CCCGTCAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2256 Length=33050 Score = 102 bits (112), Expect = 6e-17 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| |||||||||||||| || |||||||| |||||||| ||||| | Sbjct 3346 CCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGAC 3405 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | || ||||| ||| | |||| | |||||||| || ||| Sbjct 3406 AGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3465 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | || ||| | || | || || || | || || Sbjct 3466 ATACCCTCCTTGTCCTG-AATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAAC 3524 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC---AAATATCTGCAT 29786 || | || || || |||||||| | || || || || |||||||| Sbjct 3525 ATCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCAT 3575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| |||||||||||||| || || ||||| |||||||| ||||| | Sbjct 3577 CCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 3636 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || || ||||| ||| | |||| | |||||||| || ||| Sbjct 3637 AGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGA 3696 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG 29705 |||||||| ||||| || ||| |||| Sbjct 3697 ATACCCTCCTTGTCCTG-AATCTTTG 3721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385118974150068