Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2200 471 3e-127 seq2174 194 1e-43 >seq2200 Length=7229 Score = 471 bits (522), Expect = 3e-127 Identities = 1041/1543 (67%), Gaps = 46/1543 (3%) Strand=Plus/Plus Query 281330 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 281389 ||||||| |||||||| || || | | || | | ||| || || ||| ||||| Sbjct 1375 GCTTCTCCTATCATTCTATCTATCTCTTGTTGTGTAAGTCTCCCCTTATCATTCGTAATC 1434 Query 281390 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 281449 || || | || || || ||| || || | || || || || | ||| ||||| Sbjct 1435 GTTATTTGATTCGACTTTCCTGTGTTCTTCTCTGTTGCTGTTACGTTCATAATGCCATTA 1494 Query 281450 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 281509 ||||| | ||| |||| ||||| ||||| || || || | | ||||| ||||| || Sbjct 1495 GCATCAATATCGAATGCTACTTCTATTTGGGGAACGCCACGTGGGGCAGGAGGGATGCCG 1554 Query 281510 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 281569 |||| || ||| | ||||| ||||||||||| || | | || || || || || Sbjct 1555 TCCAGATGAAACTTCCCCAGTAAGTTATTATCTTTCGTCATTGCTCTCTCTCCTTCAAAC 1614 Query 281570 ATTTGGATAGTAACTACA---GTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTT 281625 | ||| || |||| ||| | ||||||||||| ||| |||||||||| |||| || || Sbjct 1615 ACTTGTAT--TAAC-ACACCTGGTTGATTATCTGCATATGTTGTAAATA-TCTGCGACTT 1670 Query 281626 TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTC 281685 || || || ||||| || || || || | || ||||||| |||||| |||||||| Sbjct 1671 CTTTGTTGGGATGGTTGTATTCCTCTCTATTAATTTCGTCATAACACCACCTGCTGTTTC 1730 Query 281686 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA-------GTTTTT 281738 ||| || | || | || | ||||| | || | | || ||| | ||| || Sbjct 1731 TAACCCTAACGATAATGGCGCCACATCTAATAATAATAAATCTTGCACTTGCGAGTTATT 1790 Query 281739 CA-TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || || ||| | ||||||||||| | |||||||||||||||||| || ||| Sbjct 1791 CACTCCTTTTAAT--------ATAGCTGCTTGGACAGCAGCACCATATGCAACGGCCTCA 1842 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCT 281856 ||||| || | || | | | | || ||||||||||| | || | || |||| Sbjct 1843 TCAGGGTTTATAGATCTACACGGCTCCTTCCCATTGAAAAATTCCTGGATTAA-TTGTTG 1901 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTTAT 281915 | ||||| ||||| | ||||| || || || || | |||||| || || | || || Sbjct 1902 GATTTTAGGTATACGCGTCGATCCCCCTACCAACACCACTTCATGTACACTACGCTT-AT 1960 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGG--TTCAAGACCAGCTCTAAACAAGTC 281973 | | ||| |||| ||||| |||||||| || || | || | |||||| | || Sbjct 1961 CTATGCTTGCATCCTTCAAAACCTTTTCAACTGGAATTAACGA--ATTTCTAAAATAATC 2018 Query 281974 --TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031 || |||| || || ||| ||||||| | || | |||| ||||||||| ||||| Sbjct 2019 AATGCACAAC--TCCTCAAATCTAGCTCTTGATAGGGAGACAGAATAATCAATCCCTTCA 2076 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 || | ||||||| |||||| |||| ||| || || ||||||| || || || | | Sbjct 2077 AATAGCGAATCAATTTCAATTGTAGCTTGTGTGCTTGATGATAGTGTTCGCTTCGCTCTT 2136 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT----- 282146 |||||| ||||| || ||||| ||||| | ||| ||| | | || | ||| Sbjct 2137 TCACATTGTGTCCGTAATCTTCTCAAGGCCCTA-CTGTTTG-TGCTTATGTCTTTATTCC 2194 Query 282147 TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCAC 282206 ||| || ||||||||||||| | ||| | ||| | |||||||||||||||||| | Sbjct 2195 TATTCTTCCTCTTGAAATCTTGTATACAAAAATCTACTAAACGATTATCAAAATCTTCCC 2254 Query 282207 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 282266 | || || | || | ||||| || || | || | || | |||||||||| | | Sbjct 2255 CCCCTAAATGTGTGTCTCCTGCTGTTGCCTTCACCTCAAATATACCATCTTCAATTGTGA 2314 Query 282267 AAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 282326 |||| ||||| || || || ||||||||||| || | |||||||| ||| | Sbjct 2315 GGAGAGACACATCGAACGTGCCTCCTCCCATATCAAATATCAACACATTCATCTCTCCCT 2374 Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 || ||||| ||||||||||| | || || || || ||||| ||||| |||| | Sbjct 2375 GCCCCTTCTTATCTAGACCATACGCTATTGCTGCTGCTGTAGGTTCGTTAATTATTCGTA 2434 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 | ||||| | || || ||| |||| ||||| || || || |||||||| |||||||| | Sbjct 2435 ATACATTCAATCCTGCTATTGTTCCCGCATCCTTTGTCGCCTGTCTTTGCGAATCGTTGA 2494 Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTG 282506 ||||||| ||||| |||||||| || || | || || || || | | | || ||| Sbjct 2495 AATATGCGGGAACCGTAATAACTGCTTCCTTCACGTCCTTCCCCAAAAACGCCTCCGCTA 2554 Query 282507 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT 282566 ||| ||||| || |||||| ||||| || || | |||| | | | |||| | Sbjct 2555 TTTCCTTCATCTTCATTAAAACCATTGCAGATATCTCCTCTGCATGAAACGTTTTGGTTG 2614 Query 282567 CATTTTGATATGATACTTCAAAATATGGTTTATTACCA---ACATTAATAACTTTAAATG 282623 | |||||| |||||| | | ||||||| ||| | | ||| ||||| Sbjct 2615 CGCCTTGATAATGTACTTCTATTAAAGGTTTATCGCCAGGGCCGGCCTTCACTACAAATG 2674 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683 |||| | ||||||||||| || ||| | |||| || | || || || |||| | Sbjct 2675 GCCAGTGTTTCATATCTGTCTGTACAGCAGGATCATCGAATTTTCGTCCTATCAATCTCT 2734 Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAA 282743 | |||||||| | || || ||||| || | || | || |||||||| || | Sbjct 2735 TCGCATCAAACACCGTGTTCTCGGGATTCCTCGCTACCTGGTTCTTTGCTGCATCCCCCA 2794 Query 282744 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 282803 | | ||||| || ||||||| ||||| ||||| || || | ||| || ||||||| Sbjct 2795 CTAATCGCTCTGTGTCCGTAAATGCTACATACGATGGTGTCGTTCTATTCCCCTGATCAT 2854 Query 282804 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | || || || || ||| | | || | |||||| |||||||| Sbjct 2855 TTGCTATTATCTCCACTCCATCGTTCTTCCATACTCCTACACA 2897 >seq2174 Length=7393 Score = 194 bits (214), Expect = 1e-43 Identities = 423/624 (68%), Gaps = 27/624 (4%) Strand=Plus/Minus Query 282264 ACAA-AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 |||| || || ||||||| ||| |||||||| | ||| | | ||| | | | | Sbjct 2151 ACAAGAACAGAAACATCAAAGGTACCACCACCAAGATCGTATACAAGAATAGT------T 2098 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 || || | || |||||||| ||||| |||| ||| || ||||| |||||||||||||| Sbjct 2097 TTTTCATCCTTCTTATCAAGTCCATAAGCAATAGCTGCTGCAGTAGGTTCATTAATAATA 2038 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| | || ||||| ||| ||||| || || |||||||| || | ||| Sbjct 2037 CGAATAACATTTAATCCTGCAATAGCTCCAGCATCCTTTGTAGCTTGTCTCTGAGCATCA 1978 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 || ||||||||||| ||||||| ||| |||| | |||||||| |||| |||| Sbjct 1977 TTGAAATATGCAGGTACAGTAACAACAGCATTCTTAACTTCTTTACCAAGATAATTTTCA 1918 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG---AATATTGC 282559 || || ||||||||||| ||||| ||| | |||| || |||||| | | | || Sbjct 1917 GCAACTTCTTTCATTTTACCTAAAACCATAGCAGAAACTTCTTCTGGTGCTAACTCTT-- 1860 Query 282560 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 282619 |||| | ||||| || || || ||||| || | |||||||| || | Sbjct 1859 TTGGCTGTCCTTTGA-CTGTCACACGAATGTATGGCTTTCCGTCTTTATTAATAA-TTGA 1802 Query 282620 AATGGCCAATATTTC-ATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 282678 | | | | || ||||| || || || |||||||| | |||||| || Sbjct 1801 ATACGGAAGCAGCTCTTTATCTCTCTGTACTTCTTTCTCATTAAAGCGACGACCAATCAA 1742 Query 282679 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATC 282738 ||||| ||||||| |||||||| || |||||| ||| || | || || || || || Sbjct 1741 ACGTTTGACATCAAAGATAGTATTTGTAGGATTATTTGCTGCATCATTCTTTGCAGCTTC 1682 Query 282739 TCCAATCAGATGTTCTGTC----TCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||| ||| |||| || || | ||| || ||||| |||||| | ||||||| Sbjct 1681 TCCTATC----TTTCTTTCATCATCAGCAAAAGATACATAACTTGGAGTAATACGATTAC 1626 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA--CCTACACAACTAAA 282852 | |||||||| | || || || || ||| | | | ||||| || ||||| | Sbjct 1625 CCTGATCATTTGGTATGATATCTACACGACCCTGT--CTATACACCCCAACACATGAGTA 1568 Query 282853 AGTTGTTCCTAAATCAATACCAAT 282876 || || |||||||||||||| || Sbjct 1567 GGTAGTACCTAAATCAATACCTAT 1544 Score = 152 bits (168), Expect = 4e-31 Identities = 220/310 (71%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 281642 GTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGA 281701 || ||| ||| ||||| |||| ||||| ||| ||||| ||||| | |||||| | |||| Sbjct 3128 GTATTTTTATTAATAACCTTGGCCATAACACCTCCAGCAGTTTCAATACCAAGGGTAAGA 3069 Query 281702 GGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATA 281761 || || ||||||| | || |||| ||| | ||| | | ||| || ||| Sbjct 3068 GGTGTAACATCAAGCAACACCATATCTTG----TGTTCCTTCGCCTGAT-----AGGATA 3018 Query 281762 GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGT 281821 |||| |||| ||| ||||| || |||||||||||||||||||||| | || || Sbjct 3017 CCTGCCTGAACAGCTGCACCGTAAGCAACAGCTTCATCAGGATTAATGCCTCTGTTGGGT 2958 Query 281822 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT 281881 | ||| || || || || | | || ||||||| | |||||||||||||| || || Sbjct 2957 TCTTTTCCGTTAAAGAATTCTTTAATAAGTTGTTGAATCTTAGGAATACGAGTAGAACCA 2898 Query 281882 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 281941 ||||| || ||||| |||| | ||||||||| | || | || ||| ||| |||| | Sbjct 2897 CCAACCAAAACAATCTCATCGATCTGTGATTTCTTAAGATCTGCATCTTCTAATACTTGT 2838 Query 281942 TCAACGGGTT 281951 | ||||||| Sbjct 2837 TTCACGGGTT 2828 Score = 105 bits (116), Expect = 5e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || |||| |||||||||||| ||||||||||| || || ||||| ||| || ||| Sbjct 2076 CCATAAGCAATAGCTGCTGCAGTAGGTTCATTAATAATACGAATAACATTTAATCCTGCA 2017 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || ||| ||| || ||||||||||| || ||||| |||||||| ||||||||| Sbjct 2016 ATAGCTCCAGCATCCTTTGTAGCTTGTCTCTGAGCATCATTGAAATATGCAGGTACAGTA 1957 Query 86239 ATAACTGCTTTATTAA 86254 | ||| || || |||| Sbjct 1956 ACAACAGCATTCTTAA 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739582303416648