Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq5045 105 6e-18 seq3328 102 8e-17 seq861 102 8e-17 seq2245 100 3e-16 seq3207 98.7 9e-16 seq973 93.3 4e-14 seq205 91.5 1e-13 >seq5045 Length=3052 Score = 105 bits (116), Expect = 6e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 39773 ATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTT 39832 |||| ||||| |||||||||||| |||| |||||| | ||||||||||| ||||||||| Sbjct 871 ATCAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTT 930 Query 39833 CAATCCCCGGTGCCCGTATTT 39853 | ||||||||||||||||||| Sbjct 931 CGATCCCCGGTGCCCGTATTT 951 >seq3328 Length=4959 Score = 102 bits (112), Expect = 8e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| || ||||||||||| |||||||||| ||| Sbjct 1348 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTCACACGCAGAAGATCCCGGGTTCGATC 1407 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 1408 CCCGGTGCCCGTAT 1421 >seq861 Length=10776 Score = 102 bits (112), Expect = 8e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| || ||||||||||| |||||||||| ||| Sbjct 6032 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTCACACGCAGAAGATCCCGGGTTCGATC 6091 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 6092 CCCGGTGCCCGTAT 6105 Score = 102 bits (112), Expect = 8e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| || ||||||||||| |||||||||| ||| Sbjct 7140 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTCACACGCAGAAGATCCCGGGTTCGATC 7199 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 7200 CCCGGTGCCCGTAT 7213 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 4021 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 4080 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 4081 CCCGGTGCCCGTAT 4094 >seq2245 Length=98491 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 85788 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 85847 Query 39838 CCCGGTGCCCGTATT 39852 ||||||||||||||| Sbjct 85848 CCCGGTGCCCGTATT 85862 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 85714 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 85773 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 85774 CCCGGTGCCCGTA 85786 >seq3207 Length=5041 Score = 98.7 bits (108), Expect = 9e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 39772 TATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGT 39831 || || ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||| Sbjct 1504 TAACAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGT 1563 Query 39832 TCAATCCCCGGTGCCCGTA 39850 || |||||||||||||||| Sbjct 1564 TCGATCCCCGGTGCCCGTA 1582 >seq973 Length=650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||| | |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 573 GCGAGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 632 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 633 CCCGGTGCCCGTAT 646 >seq205 Length=11465 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 39784 ATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATCCCCGGT 39843 |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||||||||| Sbjct 11465 ATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATCCCCGGT 11406 Query 39844 GCCCGTAT 39851 |||||||| Sbjct 11405 GCCCGTAT 11398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466000414597120