Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3399 89.7 5e-13 seq2256 84.2 2e-11 >seq3399 Length=84741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCT 134568 ||| || ||| |||||| ||||||||||||||| | || || | || || |||| Sbjct 39820 GTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCA-TCATCAAGCT 39878 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | || || || || || | |||||||| || || || || || ||||| || || || | Sbjct 39879 GCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCT 39938 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | || || || | |||||||| | ||||||||||| || || ||||| || | Sbjct 39939 TGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCG 39998 Query 134689 TTAAAGTTTTAACGAAAATTTGCATTTT 134716 | | || || || ||||| |||||||| Sbjct 39999 TCAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2256 Length=33050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | ||| | || || || || || || ||||||||||| || | | Sbjct 3577 CCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 3636 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || ||||| ||||| |||||||||| |||||||||||| || || Sbjct 3637 AGCGTCCTGCCA-TCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3695 Query 134606 TATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || || ||||| ||| Sbjct 3696 AATACCCTCCTTGTCCTGAATCTTT 3720 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | ||| | || || || ||||| || ||||||||||| || | | Sbjct 3346 CCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGAC 3405 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || | ||| ||||| |||||||||| |||||||||||| || || Sbjct 3406 AGCGTCCTGCCA-TCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3464 Query 134606 TATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || ||||| || Sbjct 3465 AATACCCTCCTTGTCCTGAATCTT 3488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505263534436960