Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2111 172 8e-38 seq372 86.0 9e-12 >seq2111 Length=7548 Score = 172 bits (190), Expect = 8e-38 Identities = 412/612 (67%), Gaps = 22/612 (4%) Strand=Plus/Minus Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 |||| ||||| ||| ||||| | ||| | || || || ||||| || || |||| Sbjct 5128 CAGCCAGTTCCATACTAGCCTCACAAGCAGCATAGTATATACACTCGAATATATTTTTAT 5069 Query 69041 TGAGATCTTGTGCTTC--TAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGC 69098 | | ||| ||||| | || |||||| ||| | | | ||| | ||| |||| || Sbjct 5068 TAATTTCTCTTGCTTTGTTTGA--ATCGAAAGGAAGACGAAGAAGTAGAAAGACATCAGC 5011 Query 69099 CAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGG 69158 | ||| ||||||||||| || || ||||||||| | ||| | | ||||||| Sbjct 5010 TAGTCCTTGAACCCCAATCCCTATCGGTCTATGTTTTAGATTGCTATATCTAGCTTCTTC 4951 Query 69159 AATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCAC 69218 |||||||| || || |||| ||||| ||||| ||||| | || |||||||| || Sbjct 4950 TATAGGATAGTAGTTCCTATCAATAATATTATTTAGATTATTGGTAACAACTTTAACAAC 4891 Query 69219 GTCCTTTAGTTTGAGAAAATCAAATCGTCCA---TCTATA---ACAAACATATTCAGTGC 69272 | |||| ||| | |||||||| | | | |||| ||||| | || | Sbjct 4890 ATGTTTTAATTTATTATAATCAAATGTTTTATTGTGTATATCTACAAAACGAGGGAGAGA 4831 Query 69273 TACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGT 69332 || |||||||||||||| || |||| ||| | || | ||| ||||||||| || || Sbjct 4830 TAATGATGCTAGATTACATACAGCTATCTCTTCAGGACTTGTATATTGTATAATTTCGCA 4771 Query 69333 ACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGC 69392 ||||| ||| || | ||| ||| |||| || ||||| |||||| | || || || Sbjct 4770 ACATAAATTGCTCGAACGTATACACCCAAGATGTTTTTGATTGCTCTTTCTATTGCAAGC 4711 Query 69393 GTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 |||||||| | ||| |||| || || ||||| || || | || | ||||| ||| Sbjct 4710 ATCCTTGTATAACATATACGGTGTTCCTGTTTCTATTTGTGCTTGTAAGATAGAAAACCA 4651 Query 69453 AACGACCCT-AGCATTTATTACGGTC-TTGTAACGCT--TCTCTTTTTCATA--TTGTGT 69506 | || || || |||||| ||| || | | || ||||| ||||||| || || Sbjct 4650 TA-AACTCTGCGCCTTTATT---GTCTTTCTTCCTCTTCTCTCTCTTTCATATCTTTCGT 4595 Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 || | | | ||||| |||||||| || || || || || ||||| || ||||| Sbjct 4594 ATCTTTC--TCTAAATTCTTCTCCCCACACTTCCGTTAAACCGGGGCATTCGTTCGGACA 4537 Query 69567 CATCAATGACCA 69578 |||||| | ||| Sbjct 4536 CATCAAAGTCCA 4525 Score = 93.3 bits (102), Expect = 6e-14 Identities = 239/361 (66%), Gaps = 5/361 (1%) Strand=Plus/Minus Query 68400 TTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCAT 68459 || ||| | || |||||||||||| |||||||| ||| |||||||| | |||||||| Sbjct 7090 TTGTGTTCTTAAATAGTACATACCTGTTTTCAGTCCTGCTCTCCATCCATGAAAATGCAT 7031 Query 68460 ACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 | | | || || | || | |||| ||||| ||||| | |||||| |||||| Sbjct 7030 AGTAGATAACTTTGCGTATGTGGGATTAATCATATGTATATTTAGCGATTGGGATTGATC 6971 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAAT 68579 ||| | | | |||| ||| |||||| | | ||||| ||||| |||||||| | Sbjct 6970 TATGTATGGTGCTCTGTCTATCGCCATATCAACAATACATTTTTGTTTTATTTCCCATAC 6911 Query 68580 AGTCTTAAAAATCTGTTTGATATCATCTGGAA---GGCTCGTATTTTGAATGGATCCACC 68636 || ||| | | | ||| ||||| | ||| | || ||| ||| | ||| Sbjct 6910 TGTTTTATATAAATCTTTTATATCTTGTGGGATCTCTCTTATATATTGTACACTACCATT 6851 Query 68637 ATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTC 68695 || | ||| |||| | |||| ||| ||| |||| || || || |||| || Sbjct 6850 ATATGCTATCAATTGTTGTCTTATGCTC-TCACTCCATAAACCTCGATCTAATAAATCTT 6792 Query 68696 TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATAT 68755 | | | ||| |||||||||| ||| |||||| |||||| | |||| || |||| Sbjct 6791 TCAATAAATGTGGATTAACTACGAAAAACTCCCCACTTAACACACGACGACAATATATAT 6732 Query 68756 T 68756 | Sbjct 6731 T 6731 >seq372 Length=768 Score = 86.0 bits (94), Expect = 9e-12 Identities = 126/175 (72%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---- 40080 || || ||||| ||||| | ||||||||||||||| | | |||||| | ||| Sbjct 47 CTTGCAGCAAAGAATGCGAGTACATGTTTAATAAAGTGTCTTTCAT----TATCATCGAG 102 Query 40081 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 | | ||| ||||| | |||| || |||||||||||||||||||| || || || Sbjct 103 TCGAGCCCAATCATTTAAATCTGCCTGCATGTCTACTTCTTCAGCTGTCCAGAAGGAAGC 162 Query 40141 CTCTGCCTTTTTGTACATGTTCCATATATCACG-ATATTGTATTGGAAAAATAAC 40194 ||||| || |||||||| | ||||| || || || ||| ||||| | || ||| Sbjct 163 TTCTGCTTTCTTGTACATCTCCCATA-ATTTCGAATGTTGAATTGGTAGAAGAAC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686725498386720