Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq3360 89.7 5e-13 seq649 86.0 6e-12 seq9070 84.2 2e-11 seq4524 84.2 2e-11 seq3703 84.2 2e-11 seq727 84.2 2e-11 >seq3360 Length=4818 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 2024 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 1965 Query 102532 GACCTGCAATGTCCATTGGT-TGCCT 102556 |||| | | |||||||| ||||| Sbjct 1964 GACCGGTTGGGACCATTGGTCTGCCT 1939 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 1804 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 1745 Query 102532 GACCTGCAATGTCCATTGGT 102551 |||| | | |||||||| Sbjct 1744 GACCGGTTGGGACCATTGGT 1725 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 102480 TAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACCTGCA 102539 ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| | Sbjct 2530 TAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGAGACCGGTT 2471 Query 102540 ATGTCCATTGGT 102551 | |||||||| Sbjct 2470 GGGACCATTGGT 2459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 1504 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 1445 Query 102532 GACC 102535 |||| Sbjct 1444 GACC 1441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 2758 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 2699 Query 102532 GACC 102535 |||| Sbjct 2698 GACC 2695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 3161 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 3220 Query 102532 GACC 102535 |||| Sbjct 3221 GACC 3224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 102480 TAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACC 102535 ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 3235 TAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGAGACC 3290 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 2271 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 2212 Query 102532 GACCTGCAATGTCCATTGGT 102551 | || | | |||||||| Sbjct 2211 GCCCGGTTGGGACCATTGGT 2192 >seq649 Length=705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 102480 TAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACCTGCA 102539 ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| | Sbjct 359 TAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGAGACCGGTT 300 Query 102540 ATGTCCATTGGT 102551 | |||||||| Sbjct 299 GGGACCATTGGT 288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 67 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 8 Query 102532 GACC 102535 |||| Sbjct 7 GACC 4 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 460 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 401 Query 102532 GACC 102535 |||| Sbjct 400 GACC 397 >seq9070 Length=11610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 102472 AGGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGA 102531 ||| | | ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||| Sbjct 932 AGGTCCTATAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGA 873 Query 102532 GACC 102535 |||| Sbjct 872 GACC 869 >seq4524 Length=19767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 102480 TAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACC 102535 ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 4204 TAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGAGACC 4259 >seq3703 Length=23370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 102480 TAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACC 102535 ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 20812 TAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGAGACC 20867 >seq727 Length=10595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 102480 TAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAGACC 102535 ||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 7035 TAGCTCAGTTGGTTAGAGCATTCGGCTAATAACCGAAAGGTCGCCGGTTCGAGACC 7090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465405373426240