Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2256 141 1e-28 seq3399 138 1e-27 seq16648 104 3e-17 seq2479 102 9e-17 seq7778 91.5 2e-13 >seq2256 Length=33050 Score = 141 bits (156), Expect = 1e-28 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTC---AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||| ||||| || ||||| || || |||||||| || || | || |||||| || Sbjct 3575 ATGCAGATCTTNTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCCA 3516 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||||| ||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 3515 TCAGATACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGAT 3456 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| |||||||| || ||||| | || |||| | || || | || || Sbjct 3455 CAGCAGCGTCTGATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTAC 3396 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || | || || ||||| || |||||| | || | ||||| Sbjct 3395 AACATTCAGAAAGAATCAACCCTTCATTTGGTGCTACGTCT 3355 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 || |||||| || |||| ||||| ||| ||||||| || ||||||||||||||||| Sbjct 3758 GATGTTGAGCCATCAGATACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGT 3699 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| || ||||||||||| |||||||| || ||||| || || |||| | || Sbjct 3698 ATTCCTCCTGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAAGATGGCAGGACG 3639 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || | || || || || || |||||| | || | |||||| | ||| Sbjct 3638 CTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCATTTGGTGCTCCGTCTTAGAGGT 3579 Query 27631 GG 27632 || Sbjct 3578 GG 3577 >seq3399 Length=84741 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || || || ||||| || || || || ||| | Sbjct 40024 AATGCAGATTTTTGTGAAGACACTGACGGGGAAAACTATAACCCTCGACGTGGAGCCTTC 39965 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| ||||||| || || |||||||| ||||| |||||||||||||| Sbjct 39964 CGACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCAGACCA 39905 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| ||||| || ||||| ||||| || || |||| | || || | ||||| || Sbjct 39904 GCAGCGCCTAATCTTCGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAA 39845 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | || |||||| ||||||||| Sbjct 39844 CATTCAGAAGGAAAGCACTCTTCA 39821 >seq16648 Length=236 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || | || |||||| || |||| ||| | || | || || || Sbjct 1 GGCAAGACCATCACCTTAGATGTTGAGCCATCAGATACCATCGAGAACGTAAAAGCCAAG 60 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||| ||||||||||||||||| || ||||| ||||| |||||||| || ||||| Sbjct 61 ATTCAGGATAAGGAGGGAATTCCTCCTGATCAGCAACGTCTCATTTTTGCCGGCAAGCAG 120 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || || | | || || | || || || | || || || || || || ||| | Sbjct 121 CTGGAAGACGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCAACCCTCCATTTG 180 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | |||||| | ||||| Sbjct 181 GTGCTCCGTCTTAGAGGTGG 200 >seq2479 Length=6792 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 32046 TGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGG 32105 ||| ||||| ||||| ||||| ||||| ||||| || ||||| | ||||| ||||| || Sbjct 1115 TGAGATGAAAGTGGCACAGCTTTCGGGGTACGTAGCGGAGCAGAGCGCCTACCACCATGG 1056 Query 32106 CGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAA 32165 ||| ||| | ||| ||||| ||| | | || |||| ||||| || || || Sbjct 1055 GGAGCAGTCTTTGCAGCAAACCATCATCACCATGGCCCAGAGGTTTGTAGGCAGCAACAA 996 Query 32166 CCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGC 32225 ||| ||||| ||||||||| ||||| ||||| | ||| | || || || ||||| Sbjct 995 CCTTAACTTCCTCGAGCCAGTAGGACAATTTGGCTCTCGGAAAGAAGGAGGAAAAGATGC 936 Query 32226 TGCGAGCTCCCGTTACATCTTCAC 32249 | | ||||||||||||| || Sbjct 935 CTCCGCCCCCCGTTACATCTTTAC 912 >seq7778 Length=1485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 64705 TCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA 64764 || |||| | | ||||| | ||||||| ||||| ||||||||| | ||||| || || Sbjct 1186 TCATTTGCTGAACGTCTTGTAGCTTTTTGTTGTGTAGAAGGAATTCTTTTTTCAGGTTCT 1127 Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGT 64809 |||||| | ||||||||||| ||||| || || || ||||||||| Sbjct 1126 TTCTGTGCAATTTTCTGGCTCAAAAAACGAGGACTTATGCCAGGT 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570158212669760