Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3399 104 1e-17 seq16648 100 2e-16 seq2256 95.1 8e-15 >seq3399 Length=84741 Score = 104 bits (114), Expect = 1e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || |||||||| ||||| |||||||| || || || || |||| | || ||| Sbjct 39815 ACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39874 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || |||| ||||| ||||| || || | ||||| ||||| | Sbjct 39875 AGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGG 39934 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||| || | | || ||||| |||||| || | |||||| ||||| Sbjct 39935 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTC 39994 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | || ||||||||||||||||| || Sbjct 39995 CCCGTCAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq16648 Length=236 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||| | |||||||||||| || ||| || |||||||| ||||| || Sbjct 201 GCCACCTCTAAGACGGAGCACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGA 142 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | ||||||| || || || |||||||| || | ||| || || || || || Sbjct 141 CAGCGTCCTGCCGTCTTCCAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGG 82 Query 34599 CACTCCCTCCTTGTC 34613 | ||||||||| || Sbjct 81 AATTCCCTCCTTATC 67 >seq2256 Length=33050 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||| | ||||||||| || || ||| || |||||||| ||||| || Sbjct 3576 GCCACCTCTAAGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 3635 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | | ||||| || || || |||||||| || | |||||| || || || || Sbjct 3636 CAGCGTCCTGCCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3695 Query 34599 CACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 3696 AATACCCTCCTTGTC 3710 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||| ||||| | ||||||||| || || || || |||||||| ||||| || Sbjct 3345 GCCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGA 3404 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | | ||||| | || || |||||||| || | |||||| || || || || Sbjct 3405 CAGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3464 Query 34599 CACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 3465 AATACCCTCCTTGTC 3479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314647714046084