Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2256 116 3e-21 seq16648 96.9 3e-15 seq3399 87.8 2e-12 >seq2256 Length=33050 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTT---GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||||||||| || || || |||||||| |||||| | || || | || || || || Sbjct 3576 CATGCAGATCTTNTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCC 3517 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || | ||||||| || || || ||||| ||||| || || || || || || Sbjct 3516 ATCAGATACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGA 3457 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| |||||| | || | |||||||| || |||||||| | ||| | || ||||| Sbjct 3456 TCAGCAGCGTCTGATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTA 3397 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||||| || || || ||| | |||||||| | ||| || | || ||| Sbjct 3396 CAACATTCAGAAAGAATCAACCCTTCATTTGGTGCTACGTCTGAGAGGCGGC 3345 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 || || || || || || | ||||||| || || ||| ||||| ||||| || || Sbjct 3758 GATGTTGAGCCATCAGATACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGT 3699 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || || ||||| |||||| | || | |||||||| || ||||||| | ||| Sbjct 3698 ATTCCTCCTGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAAGATGGCAGGACG 3639 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 | || |||||||||||||| || ||||| ||| | |||||||| | ||| | | ||| Sbjct 3638 CTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCATTTGGTGCTCCGTCTTAGAGGT 3579 Query 27213 GGCAT 27217 ||||| Sbjct 3578 GGCAT 3574 >seq16648 Length=236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| | || || | || || || || || || | || |||| || ||| || Sbjct 1 GGCAAGACCATCACCTTAGATGTTGAGCCATCAGATACCATCGAGAACGTAAAAGCCAAG 60 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| || || || || || || || ||||| || ||| | || | |||||||| || Sbjct 61 ATTCAGGATAAGGAGGGAATTCCTCCTGATCAGCAACGTCTCATTTTTGCCGGCAAGCAG 120 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||||||| | ||| | || |||||||||||||| || ||||| ||| | |||||| Sbjct 121 CTGGAAGACGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCAACCCTCCATTTG 180 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || | ||| | | |||||||| Sbjct 181 GTGCTCCGTCTTAGAGGTGGCAT 203 >seq3399 Length=84741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || || |||| || || || ||||| || ||| Sbjct 40023 ATGCAGATTTTTGTGAAGACACTGACGGGGAAAACTATAACCCTCGACGTGGAGCCTTCC 39964 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || |||||||| || || || || || || Sbjct 39963 GACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCAGACCAG 39904 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| |||| | ||| || || || | || || | || | ||||| |||||| Sbjct 39903 CAGCGCCTAATCTTCGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTACAAC 39844 Query 27168 ATTCAAAAGGA 27178 ||||| ||||| Sbjct 39843 ATTCAGAAGGA 39833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434802342024960