Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3399 152 1e-31 seq2256 143 6e-29 seq16648 138 3e-27 >seq3399 Length=84741 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||| || || || ||||| || || | || || || ||||| || ||||| Sbjct 39820 GTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTG 39879 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| ||||| || ||||| ||||||| || || |||||||||||||| Sbjct 39880 CTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTT 39939 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| |||||||| ||||| || || || ||||| || || || || ||||| Sbjct 39940 GGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGT 39999 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | ||||||||| Sbjct 40000 CAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2256 Length=33050 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || || ||||| || ||||| ||||| | || ||||| |||||||||| |||| Sbjct 3370 TGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTCCAACTGC 3429 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| || ||||||||||| ||||| Sbjct 3430 TTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTC 3489 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || ||||| || || ||||| || | ||||||||||| || || Sbjct 3490 GCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTCTTGCCAGTC 3549 Query 211092 AGAGTCTTTACAAA 211105 |||||||| || || Sbjct 3550 AGAGTCTTCACGAA 3563 Score = 131 bits (144), Expect = 4e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || |||||||| || ||||| ||||| | || ||||| ||||||||||||||| Sbjct 3601 TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTCCAGCTGC 3660 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| || ||||||||||| |||||| Sbjct 3661 TTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTT 3720 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||| || || ||||| || || ||||| || | ||||| Sbjct 3721 GCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGAT 3767 >seq16648 Length=236 Score = 138 bits (152), Expect = 3e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || |||||||| || ||||| ||||| | || ||||| || |||||||||||| Sbjct 176 TGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCGTCTTCCAGCTGC 117 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || ||||| || |||||||||| ||| ||||| ||||| ||||| Sbjct 116 TTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGGAATTCCCTCCTTATCCTGAATCTTG 57 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| ||||| |||||||| || || ||||| || | ||||| ||||| || Sbjct 56 GCTTTTACGTTCTCGATGGTATCTGATGGCTCAACATCTAAGGTGATGGTCTTGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158834947296020