Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3399 143 6e-29 seq2256 134 3e-26 seq19519 125 2e-23 >seq3399 Length=84741 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| |||||| ||| || || | ||||| |||| | |||||| ||||| || ||||| Sbjct 39820 GTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCAAGCTG 39879 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| || || || ||||| || |||||||| || ||||| |||||||| Sbjct 39880 CTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATCTT 39939 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| |||||| ||||| || | |||||||| | || || || || ||||| Sbjct 39940 GGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTCCCCGT 39999 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 || || || | || | |||||||| Sbjct 40000 CAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2256 Length=33050 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | |||||||| | || || || |||||||| | |||| Sbjct 3370 TGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTCCAACTGC 3429 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || || || || || || || |||||||| |||||||| || ||||| Sbjct 3430 TTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTC 3489 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || ||||| ||||| | || || ||||| |||||||||||||| ||| Sbjct 3490 GCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTCTTGCCAGTC 3549 Query 225691 AAAGTTTTTATGAA 225704 | ||| || | ||| Sbjct 3550 AGAGTCTTCACGAA 3563 >seq19519 Length=3877 Score = 125 bits (138), Expect = 2e-23 Identities = 112/139 (81%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| |||||| ||| ||||||||||||| ||||||||| Sbjct 779 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCGC 838 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | |||||| || |||||||||| | |||||| |||| |||||||| || Sbjct 839 TTGTGCGAGCCCCCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 898 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 899 GATACTTAACGCGTTAGCT 917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192205017375512