Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2111 206 4e-48 seq372 98.7 1e-15 >seq2111 Length=7548 Score = 206 bits (228), Expect = 4e-48 Identities = 416/609 (68%), Gaps = 16/609 (3%) Strand=Plus/Minus Query 75984 CAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 76043 |||| ||||| ||| ||||| | ||| | || || || ||||| || || |||| Sbjct 5128 CAGCCAGTTCCATACTAGCCTCACAAGCAGCATAGTATATACACTCGAATATATTTTTAT 5069 Query 76044 TAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 ||| ||| |||| ||| |||||| | | | ||| | ||| |||| |||| Sbjct 5068 TAATTTCTCTTGCTTTGTTTGAATCGAAAGGAAGACGAAGAAGTAGAAAGACATCAGCTA 5009 Query 76104 GTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAA 76163 |||| ||||| ||||| || || ||||||||| | |||| | | ||||||| | Sbjct 5008 GTCCTTGAACCCCAATCCCTATCGGTCTATGTTTTAGATTGCTATATCTAGCTTCTTCTA 4949 Query 76164 TAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGT 76223 |||| || || || |||| ||||| ||||| ||||| || ||| |||||||| || | Sbjct 4948 TAGGATAGTAGTTCCTATCAATAATATTATTTAGATTATTGGTAACAACTTTAACAACAT 4889 Query 76224 CCTTTAGTTTGAGAAAATCAAATTTTCCATC-----TATC-ACAAACATATTAAGAGCTA 76277 |||| ||| | |||||||| || || |||| ||||| | |||| || Sbjct 4888 GTTTTAATTTATTATAATCAAATGTTTTATTGTGTATATCTACAAAACGAGGGAGAGATA 4829 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGC 76337 |||||||||||||| || |||| ||| | || | | | ||||||||| || || | Sbjct 4828 ATGATGCTAGATTACATACAGCTATCTCTTCAGGACTTGTATATTGTATAATTTCGCAAC 4769 Query 76338 ATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGT 76397 ||| ||| || | ||| ||||||| || ||| ||||||||| | || || | | Sbjct 4768 ATAAATTGCTCGAACGTATACACCCAAGATGTTTTTGATTGCTCTTTCTATTGCAAGCAT 4709 Query 76398 CCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 76457 |||| || | | | |||| ||||| ||||| || |||| || | ||||| ||| | Sbjct 4708 CCTTGTATAACATATACGGTGTTCCTGTTTCTATTTGTGCTTGTAAGATAGAAAACCATA 4649 Query 76458 CGACTCT-AGCTTTTATTATAGATTTGTATCGCT--TCTCTCTTTCATA--TTGTGTATA 76512 ||||| || |||||| | ||| | | || ||||||||||||| || |||| Sbjct 4648 -AACTCTGCGCCTTTATTGT--CTTTCTTCCTCTTCTCTCTCTTTCATATCTTTCGTATC 4592 Query 76513 TAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACAT 76572 | | | |||||| |||||||| || || ||||| || ||||| ||||||||||| Sbjct 4591 TTTC--TCTAAATTCTTCTCCCCACACTTCCGTTAAACCGGGGCATTCGTTCGGACACAT 4534 Query 76573 CAATGACCA 76581 ||| | ||| Sbjct 4533 CAAAGTCCA 4525 >seq372 Length=768 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097 || |||||||| ||||| | ||||||||||||||| | | |||||| | ||| | Sbjct 47 CTTGCAGCAAAGAATGCGAGTACATGTTTAATAAAGTGTCTTTCATTATCATCGAGTCGA 106 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 ||| ||||| | |||| || ||||||||||||||||||||||| || || ||| Sbjct 107 GCCCAATCATTTAAATCTGCCTGCATGTCTACTTCTTCAGCTGTCCAGAAGGAAGCTTCT 166 Query 47158 GCTTTTTTATACATATTCCATA 47179 ||||| || ||||| | ||||| Sbjct 167 GCTTTCTTGTACATCTCCCATA 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712744153455360