Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3399 140 8e-28 seq2256 140 8e-28 seq16648 131 4e-25 >seq3399 Length=84741 Score = 140 bits (154), Expect = 8e-28 Identities = 150/198 (76%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||| ||||| || || || || ||||| || |||||||| ||||| Sbjct 40026 AAAATGC---AGATTTTTGTGAAGACACTGACGGGGAAAACTATAACCCTCGACGTGGAG 39970 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| ||||| || || || ||||| ||||||||||| || || ||||| Sbjct 39969 CCTTCCGACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCA 39910 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || |||||||| ||||| ||||| || ||||| || ||||| |||| Sbjct 39909 GACCAGCAGCGCCTAATCTTCGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGAC 39850 Query 178095 TATAACGTCCAAAAAGAA 178112 || ||| | || || ||| Sbjct 39849 TACAACATTCAGAAGGAA 39832 >seq2256 Length=33050 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| ||||| || || || ||||||||| | || || || ||||| ||||| Sbjct 3563 TTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCCATCAGATACCATT 3504 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 ||||| || || |||||||||||||| || || || ||||| || ||||| || || Sbjct 3503 GAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGCGTCTG 3444 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 || || ||||| || ||| | |||||||| ||||| || | ||||| ||| | || ||| Sbjct 3443 ATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTACAACATTCAGAAA 3384 Query 178110 GAATCAACACTGCAT 178124 |||||||| || ||| Sbjct 3383 GAATCAACCCTTCAT 3369 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 |||||| | || || || ||||| ||||| ||||| || || ||||||||||||| Sbjct 3767 ATCACCTTAGATGTTGAGCCATCAGATACCATTGAGAATGTGAAGGCAAAGATTCAGGAC 3708 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || || || || ||||| || ||||| || || || || ||||| || ||||| |||||| Sbjct 3707 AAGGAGGGTATTCCTCCTGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAAGAT 3648 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || | ||||| ||| | || ||||| || || || ||| Sbjct 3647 GGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCAT 3600 >seq16648 Length=236 Score = 131 bits (144), Expect = 4e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || || |||||| | || || || ||||| |||||||||||||| ||| ||| Sbjct 1 GGCAAGACCATCACCTTAGATGTTGAGCCATCAGATACCATCGAGAACGTAAAAGCCAAG 60 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 |||||||| || || ||||| ||||| || |||||||| || || || ||||| || ||| Sbjct 61 ATTCAGGATAAGGAGGGAATTCCTCCTGATCAGCAACGTCTCATTTTTGCCGGCAAGCAG 120 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || ||||| || | ||||| ||| | || ||||| ||||| || ||| Sbjct 121 CTGGAAGACGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCAACCCTCCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203401953937512