Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3399 134 1e-26 seq2256 93.3 4e-14 >seq3399 Length=84741 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||||| |||||||||||||| ||||||||||| || | | || || Sbjct 39815 ACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39874 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| || |||||||| ||||| | |||| | ||| |||||| | Sbjct 39875 AGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGG 39934 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||||| | |||||| || | ||||| ||||| Sbjct 39935 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTC 39994 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| ||||| || ||||||||||| || Sbjct 39995 CCCGTCAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2256 Length=33050 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||||| ||||| ||| || || || ||||||||||| || || || Sbjct 3345 GCCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGA 3404 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || | |||||||||||| || ||||| ||||| || || | || Sbjct 3405 CAGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3464 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | || | ||||| | | || || | ||| | Sbjct 3465 AATACCCTCCTTGTCC-TGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAA 3523 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA---ATCTGCATG 41863 | || | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 3524 CATCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || || ||| ||||||||||| || || || || || | Sbjct 3586 AGACGGAGCACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTG 3645 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| ||||| || || | |||| | |||| Sbjct 3646 CCATCTTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCC 3705 Query 41765 TTGTCCATGATTTTTTG-CTTCA 41786 |||||| ||| | |||| ||||| Sbjct 3706 TTGTCC-TGAATCTTTGCCTTCA 3727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462180634177600