Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq18 111 1e-19 seq1943 96.9 3e-15 >seq18 Length=557087 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||||||| || ||| ||| |||||||||||||| || Sbjct 279990 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGA 280049 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | | || ||||| || || |||||||| || | ||||| || || ||||| Sbjct 280050 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280109 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| ||| ||| || | | | | |||| |||||| Sbjct 280110 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCAC 280169 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || ||||| ||||| || || ||||||||||| |||||| Sbjct 280170 ATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280218 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||||||| || ||| ||| |||||||||||||| || Sbjct 280218 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGA 280277 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | | || ||||| || || |||||||| || | ||||| || || ||||| Sbjct 280278 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280337 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| ||| ||| || | | | | |||| |||||| Sbjct 280338 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCAC 280397 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || ||||| ||||| || || ||||||||||| |||||| Sbjct 280398 ATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280446 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||||||| || ||| ||| |||||||||||||| || Sbjct 280446 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGA 280505 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | | || ||||| || || |||||||| || | ||||| || || ||||| Sbjct 280506 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280565 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| ||| ||| || | | | | || |||||| Sbjct 280566 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCAC 280625 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || ||||||||||||||||| ||||| Sbjct 280626 ATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 280673 >seq1943 Length=707543 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||||| ||||||||||||||||| || || | |||| || Sbjct 224026 TACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATC 224085 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| ||||| ||||| || | ||||| || || || || | ||||||||||| Sbjct 224086 AAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTG 224145 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | | |||| | ||||| || | || || || || Sbjct 224146 GATTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 224205 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || |||||||| ||||||||||| || Sbjct 224206 TCCCGTAAGGGTCTTCACGAAGATTTGCATTTT 224238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395052738122965