Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1943 123 2e-23 seq18 116 3e-21 seq2794 89.7 5e-13 >seq1943 Length=707543 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || |||||||| ||||| ||||| || || || ||||| ||||| ||||||| ||| Sbjct 224241 TCTAAAATGCAAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGAA 224182 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||||| |||||| || || || ||| |||||||| ||| | ||||| Sbjct 224181 CCTTCCGACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCT 224122 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || ||||||||||| || ||||| || || || | || ||| | |||| | ||| Sbjct 224121 GATCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGAT 224062 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || |||||||| || ||| || ||||| ||||| Sbjct 224061 TACAACATTCAGAAGGAAAGCACCCTTCACTTGGTA 224026 >seq18 Length=557087 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| ||||| || || ||||| |||| || || || || Sbjct 280673 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280614 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || || || ||| | ||||||||| ||| | || || || || Sbjct 280613 GATACCATCGAAAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCTGATCA 280555 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| || | ||| || ||||| || Sbjct 280554 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAA 280495 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 280494 CATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 280447 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || || || || ||||| |||| || || || || Sbjct 280218 CATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATC 280159 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| | ||||||||| ||| | || || || | Sbjct 280158 AGACACCATTGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCTGATC 280100 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||| ||||| ||| |||| || | ||| || ||||| | Sbjct 280099 AGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACA 280040 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 280039 ACATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 279991 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || || || || ||||| |||| || || || || Sbjct 280446 CATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATC 280387 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| | ||||||||| ||| | || || || | Sbjct 280386 AGACACCATTGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCTGATC 280328 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||| ||||| ||| |||| || | ||| || ||||| | Sbjct 280327 AGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACA 280268 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 280267 ACATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 280219 >seq2794 Length=11877 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 |||||| |||| || || || || ||||| || || ||| || || | ||||||| Sbjct 3364 ACGCGTTTCATGAAGAGGTCTGGGATCCACAGCGCCGGGAAAAGGTCTCTCGCGCGCATT 3423 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 |||||||||||| |||||| | |||| ||| || || | ||| |||||||||||| Sbjct 3424 TCCTCTTTGCCGTGGTTCTTCCGAATGTCCAGAAACTCAAAAATGTCTGCATGCCACGGC 3483 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGT-CTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 || | ||| || || | || ||| | | ||| ||| ||||| || ||||| || | Sbjct 3484 TCCACGTACACCGC-GAGGCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCACGTATCGCGA 3542 Query 23524 CGTGTTGTTGTACACTCT 23541 || || |||| | || || Sbjct 3543 CGCGTCGTTGAAGACCCT 3560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 209/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | ||||| ||||||||||| || | ||| ||| || | |||| || Sbjct 2777 GAGGCCAAGTTGCAGACGGCCACCTCCTCGGGGCTGGTGAACTGCACGACTTCGCAGCAC 2836 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGCACGAATC 23145 | ||||| | | |||||||| | ||| ||||||||| || || ||||||| || Sbjct 2837 AAGTTGCTGCTGCGCAGCGTGCCCAGGT-GCTGCTGGTTGCTCTTCCGGTTGCACGCGTC 2895 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 ||||| ||||||||||| || ||||| |||| ||||| || | || || ||||| Sbjct 2896 TTTGTACAGCATGTACGGGGTCCCCGTTTCGATCTGCGCCTGCAGAATGGCGAACCACAG 2955 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCC--TCGTACTTTTGGTACAAC 23263 |||| ||| || |||| || ||| || | || ||||||| || ||||| | Sbjct 2956 CTTCTGCGCGCCCAC-CGTCCGCCGCCCCTTCC-CCGCCCGTTCGTACTCTTCGTACAGC 3013 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACATGAG 23322 || || || || || || | | || | ||| || |||| | ||| ||| ||||| || Sbjct 3014 GCCTCGAACTCCGCGCCCCACCGCTCCGTCAGCCCGGGGCACTCGCA-CGGGCACATCAG 3072 Query 23323 ACTCCAC 23329 ||||| Sbjct 3073 CGTCCAC 3079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740406246800