Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq18 89.7 4e-13 seq1943 82.4 6e-11 >seq18 Length=557087 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||| || ||||| |||||||| | || || | | ||||| Sbjct 280464 CACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTC 280523 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | ||||| | ||||||||| || | |||||| ||||| Sbjct 280524 CAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTG 280583 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | ||| ||||| |||||| |||| || ||||| || Sbjct 280584 AATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGTCTT 280643 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTA 19045 ||||| | ||| || ||||| || |||||| || Sbjct 280644 CCCTGTAAGAGTCTTCACAAAGATCTGCATTGTA 280677 >seq1943 Length=707543 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 18851 TCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAA 18910 ||||| ||||| |||||||||| | || || |||| || || || || || || | Sbjct 224045 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCTGCGAAG 224104 Query 18911 ATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGG 18970 ||||| | ||||||||| || | |||||| ||||| |||||| || || | Sbjct 224105 ATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTCACATTT 224164 Query 18971 CCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACA 19030 ||| || ||| ||| ||| |||| || |||||||| || || | || || || Sbjct 224165 TCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTAAGGGTCTTCACG 224224 Query 19031 AAAATTTGCATTTTA 19045 || |||||||||||| Sbjct 224225 AAGATTTGCATTTTA 224239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549229593010