Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq18 141 2e-28 >seq18 Length=557087 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || || ||||||||||| || || ||| Sbjct 280444 ATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 280503 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || || || || || || || || || || || | ||| ||||||||| Sbjct 280504 GACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGA 280563 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || |||||||||||||| || |||||||| | |||||| || || Sbjct 280564 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCC 280623 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || ||||| || || ||||| ||||||||| Sbjct 280624 ACATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 280674 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || || ||||||||||| || || ||| Sbjct 279988 ATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 280047 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || || || || || || || || || || || | ||| ||||||||| Sbjct 280048 GACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGA 280107 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || |||||||||||||| || ||||| || | ||| || || || Sbjct 280108 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCC 280167 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 280168 ACATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || || ||||||||||| || || ||| Sbjct 280216 ATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 280275 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || || || || || || || || || || || | ||| ||||||||| Sbjct 280276 GACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGA 280335 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || |||||||||||||| || ||||| || | ||| || || || Sbjct 280336 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCC 280395 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 280396 ACATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151329580557820