Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq18 113 4e-20 seq1943 91.5 1e-13 >seq18 Length=557087 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCT 48575 ||| || ||||| ||| ||| || |||||||||||||||| || ||| || |||| Sbjct 280008 CACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGC-GTCCTTCCATCCT 280066 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 280067 CCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCT 280126 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | | ||||| || | | |||| |||| || ||||| | Sbjct 280127 GAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTCT 280186 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| ||||||||||| |||||||| Sbjct 280187 TCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCT 48575 ||| || ||||| ||| ||| || |||||||||||||||| || ||| || |||| Sbjct 280236 CACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGC-GTCCTTCCATCCT 280294 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 280295 CCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCT 280354 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | | ||||| || | | |||| |||| || ||||| | Sbjct 280355 GAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTCT 280414 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| ||||||||||| |||||||| Sbjct 280415 TCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCT 48575 ||| || ||||| ||| ||| || |||||||||||||||| || ||| || |||| Sbjct 280464 CACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGC-GTCCTTCCATCCT 280522 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 280523 CCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCT 280582 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | |||||||| | | |||| |||| || ||||| | Sbjct 280583 GAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGTCT 280642 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 | || || ||||| |||||||| |||||||| || Sbjct 280643 TCCCTGTAAGAGTCTTCACAAAGATCTGCATTGT 280676 >seq1943 Length=707543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || || ||||| ||||| ||||| |||||||||||||| | || ||| || |||| | Sbjct 224027 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGA-AAGAGTC-CTGCCGTCAT 224084 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||| || || | || | |||||||||||| ||| | | |||||||| Sbjct 224085 CAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTT 224144 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||| | | | ||||| |||| || ||| |||| || ||||||| Sbjct 224145 GGATTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTT 224204 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || ||||| || || ||||| Sbjct 224205 TTCCCGTAAGGGTCTTCACGAAGATTTGCAT 224235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421227249894665