Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3164 131 1e-25 seq2729 131 1e-25 seq1985 131 1e-25 seq1943 131 1e-25 seq389 131 1e-25 seq90 131 1e-25 seq18 114 9e-21 seq2261 91.5 1e-13 seq2075 91.5 1e-13 >seq3164 Length=2536 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 707 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 766 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 767 TAATCCATTCATGCACGTCACTAATTAGATGACGA 801 >seq2729 Length=19671 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 3912 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 3971 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 3972 TAATCCATTCATGCACGTCACTAATTAGATGACGA 4006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 5999 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 6058 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 6059 GCCAATATTTAGCTTTAT 6076 >seq1985 Length=203113 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 32853 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 32912 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 32913 TAATCCATTCATGCACGTCACTAATTAGATGACGA 32947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 34941 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 35000 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 35001 GCCAATATTTAGCTTTAT 35018 >seq1943 Length=707543 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 547851 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 547792 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 547791 TAATCCATTCATGCACGTCACTAATTAGATGACGA 547757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 545763 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 545704 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 545703 GCCAATATTTAGCTTTAT 545686 >seq389 Length=1148824 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 933713 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 933654 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 933653 TAATCCATTCATGCACGTCACTAATTAGATGACGA 933619 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 952143 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 952084 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 952083 TAATCCATTCATGCACGTCACTAATTAGATGACGA 952049 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 981295 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 981236 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 981235 TAATCCATTCATGCACGTCACTAATTAGATGACGA 981201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 931625 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 931566 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 931565 GCCAATATTTAGCTTTAT 931548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 950056 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 949997 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 949996 GCCAATATTTAGCTTTAT 949979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 977644 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 977585 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 977584 GCCAATATTTAGCTTTAT 977567 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 979207 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 979148 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 979147 GCCAATATTTAGCTTTAT 979130 >seq90 Length=439040 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 672 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 613 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 612 TAATCCATTCATGCACGTCACTAATTAGATGACGA 578 >seq18 Length=557087 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||||| ||||| ||| ||| || ||||| |||||||||||| Sbjct 279991 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280050 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | || || ||||| || || || || || ||||| | || Sbjct 280051 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGA 280110 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||||||||||| | || ||| || || Sbjct 280111 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACA 280170 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||||||||| || ||||||||| Sbjct 280171 TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280218 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||||| ||||| ||| ||| || ||||| |||||||||||| Sbjct 280219 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280278 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | || || ||||| || || || || || ||||| | || Sbjct 280279 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGA 280338 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||||||||||| | || ||| || || Sbjct 280339 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACA 280398 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||||||||| || ||||||||| Sbjct 280399 TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280446 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||||| ||||| ||| ||| || ||||| |||||||||||| Sbjct 280447 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280506 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | || || ||||| || || || || || ||||| | || Sbjct 280507 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGA 280566 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| ||| ||||||||| | || |||||| || || Sbjct 280567 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACA 280626 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | || ||||| || |||||||| Sbjct 280627 TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 280673 >seq2261 Length=2993 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 1675 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 1616 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 1615 GCCAATATTTAGCTTTAT 1598 >seq2075 Length=3612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||| ||||||||||| | Sbjct 2382 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTCTCAC 2323 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 2322 GCCAATATTTAGCTTTAT 2305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334928156681615