Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18 136 3e-27 seq1943 111 1e-19 >seq18 Length=557087 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || ||||||| || ||||| | | Sbjct 280673 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280614 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 280613 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280554 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||| ||| | |||||| | || | || ||||||||| Sbjct 280553 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280494 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| |||||| | || || || |||| Sbjct 280493 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCG 280459 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || ||||||| || ||||| | | Sbjct 280217 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280158 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 280157 GACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280098 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||| ||| | |||||| | || | || ||||||||| Sbjct 280097 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280038 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| |||||| | || || || |||| Sbjct 280037 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCG 280003 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || ||||||| || ||||| | | Sbjct 280445 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280386 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 280385 GACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280326 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||| ||| | |||||| | || | || ||||||||| Sbjct 280325 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280266 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| |||||| | || || || |||| Sbjct 280265 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCG 280231 >seq1943 Length=707543 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 ||| |||| |||||||| || || || || | || || ||||| ||||||| || ||| Sbjct 224243 TTTCTAAA-ATGCAAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTG 224185 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 ||| | |||| ||| | || || | || ||||| |||||||||||||| || || Sbjct 224184 GAACCTTCCGACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCG 224125 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || ||||| || |||||||| || || || || || | || || | | || | || Sbjct 224124 CCTGATCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCG 224065 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||||||||| || ||| |||| | || || || Sbjct 224064 GATTACAACATTCAGAAGGAAAGCACCCTTCACTTGGT 224027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419704136495725