Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 190 4e-43 seq1943 147 4e-30 seq2762 96.9 6e-15 seq2009 86.0 1e-11 seq1978 84.2 4e-11 seq599 84.2 4e-11 seq3 84.2 4e-11 >seq18 Length=557087 Score = 190 bits (210), Expect = 4e-43 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || ||||||||||| || ||||| ||||| || || ||||| Sbjct 280000 AGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 280059 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| |||||||| || || | || || || || |||||||| ||| Sbjct 280060 CCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCC 280119 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| || ||| |||||||||| || || || || | ||| Sbjct 280120 TTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTG 280179 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||||||||| || || || |||||||| Sbjct 280180 ATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 190 bits (210), Expect = 4e-43 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || ||||||||||| || ||||| ||||| || || ||||| Sbjct 280228 AGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 280287 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| |||||||| || || | || || || || |||||||| ||| Sbjct 280288 CCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCC 280347 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| || ||| |||||||||| || || || || | ||| Sbjct 280348 TTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTG 280407 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||||||||| || || || |||||||| Sbjct 280408 ATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 179 bits (198), Expect = 7e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || ||||||||||| || ||||| ||||| || || ||||| Sbjct 280456 AGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 280515 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| |||||||| || || | || || || || |||||||| ||| Sbjct 280516 CCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCC 280575 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| || |||||||| |||| || || || || | ||| Sbjct 280576 TTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTG 280635 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || || ||||| || || ||||||||| Sbjct 280636 ATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 280674 >seq1943 Length=707543 Score = 147 bits (162), Expect = 4e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || ||| || || || ||||| ||||| || || ||||| || || || Sbjct 224026 TACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATC 224085 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||||| || ||||| || || | || || || || || ||||| ||||||||||| Sbjct 224086 AAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTG 224145 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || ||||| || ||||||||||| | | ||| || || | ||||||||||| Sbjct 224146 GATTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 224205 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| |||||||| ||||| || |||||| Sbjct 224206 TCCCGTAAGGGTCTTCACGAAGATTTGCATT 224236 >seq2762 Length=14237 Score = 96.9 bits (106), Expect = 6e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| || |||||| || || || |||||||||||||| ||||||| Sbjct 1487 CATGACGCCGGCGCGCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCCTG 1428 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || ||||| | |||||||| || |||||||| | ||||| || ||||| | || Sbjct 1427 CAGCGAAATCAAGTCCATGAACTCGAAGGGGTTGGCAGCGCCGAAGGCCTTGGCGCCGCC 1368 Query 10055 GAGTGCTGTG-AAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAG 10105 ||| || || | | |||||| ||||||||||||| ||||||| ||| || Sbjct 1367 GAG-GCACTGCAGCAGGCGGTCCGCCACGAACTCGACGTACTGGGCCATGAG 1317 >seq2009 Length=157417 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 19990 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 19931 Query 84517 CC 84518 || Sbjct 19930 CC 19929 >seq1978 Length=212220 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 194990 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 195045 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 195579 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 195524 >seq599 Length=377263 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 361505 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 361450 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 361832 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 361887 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 363100 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 363045 >seq3 Length=130227 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 67655 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 67600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921568657893800