Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2794 172 1e-37 seq2762 84.2 4e-11 >seq2794 Length=11877 Score = 172 bits (190), Expect = 1e-37 Identities = 402/597 (67%), Gaps = 22/597 (4%) Strand=Plus/Plus Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455 ||| |||||||| ||| ||||||||| ||| | | ||| |||| | || Sbjct 2500 GGCCGCGTAGTAAATGCACTCGAAGATGTGGGCGTTGAGCTGGCGAGCCTGGGGCGAGTC 2559 Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 ||||||| || || || || ||| ||||||| || ||||| ||||||| ||||||||| Sbjct 2560 GAAGGGGTAGCGCAGCAGCAGAAAGGCGTCGGCGAGGCCCTGGACGCCGAGGCCGATGGG 2619 Query 244516 TCTGTGTCGC---TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 ||||| || ||| || |||| || ||||| |||||||| ||||||| |||||| Sbjct 2620 CCTGTGGCGGAAGTTGCTGCTGCGC---GCCTCGGGGACGGGGTAGAAGTTGCGGTCGAT 2676 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | ||||| | |||||| || || | | |||||| || || |||||| | Sbjct 2677 GATGTTGTTCAAGTTGCGCGTCATGACGGCCACGACGCGCTTGAGGCCCTCGAAGTCGAA 2736 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 || | | | | ||| ||| | || | || || | ||| ||||| Sbjct 2737 GGCGC---GCTTCGCCGCG-------TCCACG-AAGCGCGGC-AGCGACACGGAGGCCAA 2784 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 ||||||||||||||||||||| | | ||||| |||| || | ||| ||| | ||| || Sbjct 2785 GTTGCAGACGGCCACCTCCTCGGGGCTGGTGAACTGCACGACTTCGCAGCACAAGTTGCT 2844 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || | |||||||||||||| || ||| ||| |||||| ||||| ||||| || Sbjct 2845 GCTGCGCAGCGTGCCCAGGTGCTGCTGGTTGCTCTTCCGGTTGCACGCGTCTTTGTACAG 2904 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 |||| | || ||| || |||| ||| || || | | | ||| || | | || Sbjct 2905 CATGTACGGGGTCCCCGTTTCGATCTGCGCCTGCAGAATGGCGAACCACAGCTTCTGCGC 2964 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 ||||||| || |||| ||| | ||||| |||||| ||||||||||| Sbjct 2965 GCCCACCGTCCGCCGCCCCTTCCCCGCCCGTTCGTACTCTTCGTACAGCGCCTCGAACTC 3024 Query 244933 GGGGCCCCAGACCT-CGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGACTCCAC 244987 | |||||| || |||| || ||||||||| ||| ||||||||| || ||||| Sbjct 3025 CGCGCCCCACCGCTCCGTC-AGCCCGGGGCAC-TCGCACGGGCACATCAGCGTCCAC 3079 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| || ||| |||| ||||| || | | | || || Sbjct 3372 CATGAAGAGGTCTGGGATCCACAGCGCCGGGAAAAGGTCTCTCGCGCGCATTTCCTCTTT 3431 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| |||||||| | |||| ||| ||||| | ||| | ||||| ||||||| ||| Sbjct 3432 GCCGTGGTTCTTCCGAATGTCCAGAAACTCAAAAATGTCTGCATGCCACGGCTCCACGTA 3491 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || |||||| || ||||||| ||| ||||||||||| Sbjct 3492 CACCGCGAGGCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCAC 3533 >seq2762 Length=14237 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||||||||| || ||||| || ||| || ||||||| |||||||| ||||||||||| Sbjct 1397 CCCCTTCGAGTTCATGGACTTGATTTCGCTGCAGGGCAAAACCAACTTCTTCGAGAAGCG 1456 Query 43130 CGTCGCCGACTACCAG 43145 ||||| |||||||||| Sbjct 1457 CGTCGGCGACTACCAG 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944284133220400