Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 >seq18 Length=557087 Score = 104 bits (114), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| |||||||||| ||||| ||| ||| ||||||||||||||||| | | Sbjct 279991 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280050 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | | || |||| ||||||||||| || || || ||||||||||| || Sbjct 280051 -AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280109 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAG-TAGATT 34075 | || ||| |||||| ||| ||| ||| | | || || | || | | | | Sbjct 280110 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCA---CATTCTCAATGGTGTCTGATGGCTC 280166 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || |||| || || || || || || || |||||||||||||| ||||| Sbjct 280167 CACA-TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 104 bits (114), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| |||||||||| ||||| ||| ||| ||||||||||||||||| | | Sbjct 280219 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280278 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | | || |||| ||||||||||| || || || ||||||||||| || Sbjct 280279 -AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280337 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAG-TAGATT 34075 | || ||| |||||| ||| ||| ||| | | || || | || | | | | Sbjct 280338 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCA---CATTCTCAATGGTGTCTGATGGCTC 280394 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || |||| || || || || || || || |||||||||||||| ||||| Sbjct 280395 CACA-TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| |||||||||| ||||| ||| ||| ||||||||||||||||| | | Sbjct 280447 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280506 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | | || |||| ||||||||||| || || || ||||||||||| || Sbjct 280507 -AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280565 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAG-TAGATTCGC 34078 | || ||| |||||| ||| ||| ||| | | |||| | | | | | | Sbjct 280566 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCAC 280625 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||| || || || || || || || || ||||||||||| |||||| Sbjct 280626 A-TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 280674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039825141330