Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1943 129 1e-24 seq1928 102 2e-16 >seq1943 Length=707543 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| |||||||| || || || || || || | || || | ||||| || | ||| Sbjct 224033 TGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGC 224092 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||| |||||||| ||| | ||||| || || || || ||||||||| Sbjct 224093 TTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTC 224152 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| || | ||| | ||| || ||||| ||||| || || || || Sbjct 224153 GCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTA 224212 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || |||||| Sbjct 224213 AGGGTCTTCACGAAGATTTGCATT 224236 >seq1928 Length=265371 Score = 102 bits (112), Expect = 2e-16 Identities = 349/539 (65%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 325124 ATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGAT 325183 || ||||| ||||| || |||| ||| | ||||| || |||||||| || ||| | Sbjct 206160 ATATCTTTTGGGTTATAGTTGGGGATGAAGGAAGACCACCCTGTTCCGATGCCT-TCGCT 206218 Query 325184 CC-ATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCGCC 325242 || ||| || || | | | ||||| ||||| |||||||||| || || ||||| | || Sbjct 206219 CCCATTGACAAGCACAGTTGGAATGACAGGAACATAATACTTGGGCTCAATCTTTTGACC 206278 Query 325243 GTCGTCGTACATATATTTCAGAAGATTGTCGTCCGTATCGACGAAAACCTGTCGAGTCTG 325302 || || || | || | ||| || |||||| | || ||| || | ||||| | Sbjct 206279 CTCTTCATAAAGGTACTCCAGCAGTGGGTCGTCTGCCTCAGGGAAGACTAGACGAGTGTA 206338 Query 325303 AGGGTTCAGTTTCatatatatatatCG---TGCACTCGCGTGATCCTTACCACCCTGCAA 325359 || ||||| | | || || || |||| ||| ||| || || || | Sbjct 206339 CGGCGCGAGTTTGGTGAAGATGTAGCGCGGTGCAGACGC---ATCTTTCCCTCCTTCTTT 206395 Query 325360 TCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATC 325419 ||||||||||| || || | ||| | | || | ||| ||||| || ||| | Sbjct 206396 CCTCGAACCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACCG 206455 Query 325420 CTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATG 325479 ||| || | | | | ||| || |||||| || ||| || ||||| || || || || Sbjct 206456 CTGCGCCATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCTG 206515 Query 325480 CTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA 325539 || || ||||| || ||||| || ||||||| || | | || ||| |||||| Sbjct 206516 TTCGGCTACGTAGCCTGACAACTGGGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGAA 206575 Query 325540 AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCT 325599 | ||| | | | |||||| || || ||| | ||||| || | || ||| Sbjct 206576 AACTGCAAACAGCACTTTGCGCTGCCCGACTTTCCAGCCATCCACAAGTTGAGGGATGGA 206635 Query 325600 TCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG-GAACG 325657 || || ||||| | ||||| || ||||||||||| | |||||||| ||||| Sbjct 206636 ACGCTCATTGTCGTATCTGGAGAATTGAACAAGTTCCTTGTTTACGAAGTCGGAGAACG 206694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179583891687870