Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1928 105 1e-17 >seq1928 Length=265371 Score = 105 bits (116), Expect = 1e-17 Identities = 350/539 (65%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 297245 ATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAA 297304 || |||||||| || || | ||||| | ||||| || || ||||| || ||| Sbjct 206160 ATATCTTTTGGGTTATAGTTGGGGATGAAGGAAGACCACCCTGTTCCGATGCCT-TCGCT 206218 Query 297305 CC-ATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACC 297363 || ||| || || | | ||||| ||||| |||||||||| || || ||||| | ||| Sbjct 206219 CCCATTGACAAGCACAGTTGGAATGACAGGAACATAATACTTGGGCTCAATCTTTTGACC 206278 Query 297364 GTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTG 297423 || ||||| || || | ||| || ||||| | || ||| || | ||||| | Sbjct 206279 CTCTTCATAAAGGTACTCCAGCAGTGGGTCGTCTGCCTCAGGGAAGACTAGACGAGTGTA 206338 Query 297424 AGGGTTCAGTTTTGTGAAAATATATCG---TGCACTCGCGTGATCCTTACCACCCTGCAA 297480 || ||||| ||||| || || || |||| ||| ||| || || || | Sbjct 206339 CGGCGCGAGTTTGGTGAAGATGTAGCGCGGTGCAGACGC---ATCTTTCCCTCCTTCTTT 206395 Query 297481 TCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATC 297540 ||||||||||| || || | ||| | | || | ||| ||||| || ||| | Sbjct 206396 CCTCGAACCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACCG 206455 Query 297541 CTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATG 297600 ||| || | | | | ||| || |||||| || ||| || ||||| || || || || Sbjct 206456 CTGCGCCATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCTG 206515 Query 297601 CTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA 297660 || || ||||| || ||||| || ||||||| || | | || ||| |||||| Sbjct 206516 TTCGGCTACGTAGCCTGACAACTGGGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGAA 206575 Query 297661 AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCT 297720 | ||| | | | |||||| || || ||| | ||||| || | || ||| Sbjct 206576 AACTGCAAACAGCACTTTGCGCTGCCCGACTTTCCAGCCATCCACAAGTTGAGGGATGGA 206635 Query 297721 TCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG-GAACG 297778 || || ||||| | ||||| || ||||||||||| | |||||||| ||||| Sbjct 206636 ACGCTCATTGTCGTATCTGGAGAATTGAACAAGTTCCTTGTTTACGAAGTCGGAGAACG 206694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102814080517750