Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 102 8e-17 seq2794 93.3 4e-14 seq1943 84.2 2e-11 >seq18 Length=557087 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| |||||||||||||| | | || | | || Sbjct 280462 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCC 280521 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || |||||||| || |||||||| || || || || Sbjct 280522 TCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 280581 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||| | ||||| || | ||| | |||| Sbjct 280582 TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGTC 280641 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 || || || | ||| || || || || |||||| || Sbjct 280642 TTCCCTGTAAGAGTCTTCACAAAGATCTGCATTGTA 280677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| |||||||||||||| | | || | | || Sbjct 280006 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCC 280065 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || |||||||| || |||||||| || || || || Sbjct 280066 TCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 280125 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || || | ||||| || | ||| | |||| Sbjct 280126 TGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTC 280185 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || || ||||| Sbjct 280186 TTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| |||||||||||||| | | || | | || Sbjct 280234 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCC 280293 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || |||||||| || |||||||| || || || || Sbjct 280294 TCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 280353 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || || | ||||| || | ||| | |||| Sbjct 280354 TGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTC 280413 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || || ||||| Sbjct 280414 TTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 >seq2794 Length=11877 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 154582 ACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTG 154641 |||| || ||||||||||| ||||| | || || | || || | ||||| | ||| Sbjct 2772 ACACGGAGGCCAAGTTGCAGACGGCCACCTCCTCGGGGCTGGTGAACTGCACGACTTCGC 2831 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 |||||| || |||| || | |||||||||| | ||| || || |||||| | Sbjct 2832 AGCACAAGTTGCTGCTGCGCAGCGTGCCCAGGTGCTGCTGGTTGCTCTTCCGGTTGCACG 2891 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||||||||||| ||||||||||| |||||||| Sbjct 2892 CGTCTTTGTACAGCATGTACGGGGTCCCCGTTTC 2925 >seq1943 Length=707543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| || |||||||||||||| | | || | |||| ||||| ||||| || || | Sbjct 224044 TTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCTGCGAA 224103 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 || || |||||||| || || || || || || || ||||| ||||| ||| ||| Sbjct 224104 GATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTCACATT 224163 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || | ||||| || | ||| | ||| || || || | || || || Sbjct 224164 TTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTAAGGGTCTTCAC 224223 Query 64432 GAAAATTTGCATTTTA 64447 ||| |||||||||||| Sbjct 224224 GAAGATTTGCATTTTA 224239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499615664462600