Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2762 104 2e-17 seq18 87.8 2e-12 >seq2762 Length=14237 Score = 104 bits (114), Expect = 2e-17 Identities = 121/159 (76%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG--GTGCAGCTCGGGCAGC-C 52744 |||| | ||||| ||||||| |||||||| || ||| || |||| ||||| | || | Sbjct 1319 CATGGCCCAGTACGTCGAGTTCGTGGCGGACCGCCTGCTGCAGTGC--CTCGG-CGGCGC 1375 Query 52745 AAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| |||| |||| ||| || || ||||| ||| || |||||||| ||||||| Sbjct 1376 CAAGGCCTTCGGCGCTGCCAACCCCTTCGAGTTCATGGACTTGATTTCGCTGCAGGGCAA 1435 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCG 52843 |||||||| ||||||||||| |||||||| || |||| Sbjct 1436 AACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGCG 1474 >seq18 Length=557087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| || || || | | | ||||| || ||||||||||| || Sbjct 279990 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGA 280049 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | ||||| || || || |||| |||| |||||||| || || ||||| Sbjct 280050 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280109 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | |||| || | | || | |||||| | | ||||| Sbjct 280110 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCA 280168 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | |||| || | || || || || || ||||| ||||| ||||||||| Sbjct 280169 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| || || || | | | ||||| || ||||||||||| || Sbjct 280218 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGA 280277 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | ||||| || || || |||| |||| |||||||| || || ||||| Sbjct 280278 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280337 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | |||| || | | || | |||||| | | ||||| Sbjct 280338 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCA 280396 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | |||| || | || || || || || ||||| ||||| ||||||||| Sbjct 280397 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280446 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| || || || | | | ||||| || ||||||||||| || Sbjct 280446 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGA 280505 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | ||||| || || || |||| |||| |||||||| || || ||||| Sbjct 280506 CAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280565 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | |||| || | | ||| | ||| || | | ||||| Sbjct 280566 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCA 280624 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || || ||||| || ||||| |||||||| Sbjct 280625 CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 280673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496233461698800